Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 AC010501.1-201ENST00000606270 1962 ntBASIC21.41■■□□□ 1.02
SEC61A2Q9H9S3 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 SMPD5-203ENST00000639008 1464 ntBASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEC61A2Q9H9S3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SEC61A2Q9H9S3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.39■■□□□ 1.02
SEC61A2Q9H9S3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.39■■□□□ 1.01
SEC61A2Q9H9S3 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SEC61A2Q9H9S3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.39■■□□□ 1.01
SEC61A2Q9H9S3 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.39■■□□□ 1.01
SEC61A2Q9H9S3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.39■■□□□ 1.01
SEC61A2Q9H9S3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 ABHD17AP5-201ENST00000580133 923 ntBASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SEC61A2Q9H9S3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 AC025884.2-201ENST00000553429 711 ntBASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SEC61A2Q9H9S3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.36■■□□□ 1.01
SEC61A2Q9H9S3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SEC61A2Q9H9S3 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.36■■□□□ 1.01
SEC61A2Q9H9S3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SEC61A2Q9H9S3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SEC61A2Q9H9S3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.36■■□□□ 1.01
SEC61A2Q9H9S3 MIR3960-201ENST00000583311 91 ntBASIC21.36■■□□□ 1.01
SEC61A2Q9H9S3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SEC61A2Q9H9S3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SEC61A2Q9H9S3 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.35■■□□□ 1.01
SEC61A2Q9H9S3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SEC61A2Q9H9S3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.35■■□□□ 1.01
SEC61A2Q9H9S3 AC007029.1-201ENST00000604183 313 ntBASIC21.35■■□□□ 1.01
SEC61A2Q9H9S3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SEC61A2Q9H9S3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SEC61A2Q9H9S3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.35■■□□□ 1.01
SEC61A2Q9H9S3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.34■■□□□ 1.01
SEC61A2Q9H9S3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SEC61A2Q9H9S3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.33■■□□□ 1.01
SEC61A2Q9H9S3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SEC61A2Q9H9S3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SEC61A2Q9H9S3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SEC61A2Q9H9S3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.32■■□□□ 1
SEC61A2Q9H9S3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SEC61A2Q9H9S3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.32■■□□□ 1
SEC61A2Q9H9S3 U85056.1-201ENST00000616429 682 ntBASIC21.32■■□□□ 1
SEC61A2Q9H9S3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SEC61A2Q9H9S3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SEC61A2Q9H9S3 AC020928.2-201ENST00000588717 2197 ntBASIC21.31■■□□□ 1
SEC61A2Q9H9S3 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SEC61A2Q9H9S3 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.3■■□□□ 1
SEC61A2Q9H9S3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
SEC61A2Q9H9S3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SEC61A2Q9H9S3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.3■■□□□ 1
SEC61A2Q9H9S3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.3■■□□□ 1
SEC61A2Q9H9S3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.3■■□□□ 1
SEC61A2Q9H9S3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.3■■□□□ 1
SEC61A2Q9H9S3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.29■■□□□ 1
SEC61A2Q9H9S3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SEC61A2Q9H9S3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SEC61A2Q9H9S3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SEC61A2Q9H9S3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.29■■□□□ 1
SEC61A2Q9H9S3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms