Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.28■■□□□ 1.48
VPS13AQ96RL7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS13AQ96RL7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS13AQ96RL7 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.27■■□□□ 1.48
VPS13AQ96RL7 AC090192.1-201ENST00000517740 490 ntBASIC24.27■■□□□ 1.48
VPS13AQ96RL7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 AL139393.2-201ENST00000608721 2025 ntBASIC24.26■■□□□ 1.47
VPS13AQ96RL7 KRT18P24-201ENST00000344739 1156 ntBASIC24.26■■□□□ 1.47
VPS13AQ96RL7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
VPS13AQ96RL7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.2■■□□□ 1.47
VPS13AQ96RL7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.2■■□□□ 1.47
VPS13AQ96RL7 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
VPS13AQ96RL7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
VPS13AQ96RL7 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.2■■□□□ 1.46
VPS13AQ96RL7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
VPS13AQ96RL7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 WHAMMP3-201ENST00000611636 1609 ntBASIC24.19■■□□□ 1.46
VPS13AQ96RL7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 AC087623.3-201ENST00000607047 1098 ntBASIC24.19■■□□□ 1.46
VPS13AQ96RL7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 AC142381.2-201ENST00000566120 298 ntBASIC24.18■■□□□ 1.46
VPS13AQ96RL7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.17■■□□□ 1.46
VPS13AQ96RL7 RASSF1-AS1-201ENST00000629828 790 ntBASIC24.17■■□□□ 1.46
VPS13AQ96RL7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
VPS13AQ96RL7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
VPS13AQ96RL7 AL162430.1-201ENST00000480705 870 ntBASIC24.17■■□□□ 1.46
VPS13AQ96RL7 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC24.17■■□□□ 1.46
VPS13AQ96RL7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 AP004833.2-201ENST00000532228 1454 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 MIR6724-1-201ENST00000616420 92 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 MIR6724-2-201ENST00000616483 92 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 MIR6724-4-201ENST00000617390 92 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 MIR6724-3-201ENST00000622482 92 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 AC097381.1-201ENST00000429019 1296 ntBASIC24.14■■□□□ 1.46
VPS13AQ96RL7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.14■■□□□ 1.46
VPS13AQ96RL7 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS13AQ96RL7 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS13AQ96RL7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.14■■□□□ 1.45
VPS13AQ96RL7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
VPS13AQ96RL7 MIR6821-201ENST00000617625 74 ntBASIC24.13■■□□□ 1.45
VPS13AQ96RL7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC24.13■■□□□ 1.45
VPS13AQ96RL7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
VPS13AQ96RL7 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
VPS13AQ96RL7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.13■■□□□ 1.45
VPS13AQ96RL7 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms