Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RPUSD3Q6P087 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.03■■□□□ 1.12
RPUSD3Q6P087 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RPUSD3Q6P087 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
RPUSD3Q6P087 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RPUSD3Q6P087 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.02■■□□□ 1.12
RPUSD3Q6P087 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RPUSD3Q6P087 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
RPUSD3Q6P087 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.02■■□□□ 1.12
RPUSD3Q6P087 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RPUSD3Q6P087 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RPUSD3Q6P087 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.02■■□□□ 1.12
RPUSD3Q6P087 AC239859.2-201ENST00000444165 318 ntBASIC22.01■■□□□ 1.11
RPUSD3Q6P087 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RPUSD3Q6P087 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.01■■□□□ 1.11
RPUSD3Q6P087 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.01■■□□□ 1.11
RPUSD3Q6P087 AL449106.1-201ENST00000608517 1980 ntBASIC22■■□□□ 1.11
RPUSD3Q6P087 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22■■□□□ 1.11
RPUSD3Q6P087 AL356441.2-201ENST00000443009 864 ntBASIC22■■□□□ 1.11
RPUSD3Q6P087 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RPUSD3Q6P087 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22■■□□□ 1.11
RPUSD3Q6P087 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RPUSD3Q6P087 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22■■□□□ 1.11
RPUSD3Q6P087 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22■■□□□ 1.11
RPUSD3Q6P087 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RPUSD3Q6P087 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.99■■□□□ 1.11
RPUSD3Q6P087 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.99■■□□□ 1.11
RPUSD3Q6P087 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.99■■□□□ 1.11
RPUSD3Q6P087 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RPUSD3Q6P087 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RPUSD3Q6P087 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RPUSD3Q6P087 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RPUSD3Q6P087 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
RPUSD3Q6P087 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RPUSD3Q6P087 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.98■■□□□ 1.11
RPUSD3Q6P087 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RPUSD3Q6P087 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.98■■□□□ 1.11
RPUSD3Q6P087 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
RPUSD3Q6P087 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RPUSD3Q6P087 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
RPUSD3Q6P087 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
RPUSD3Q6P087 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
RPUSD3Q6P087 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
RPUSD3Q6P087 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
RPUSD3Q6P087 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
RPUSD3Q6P087 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
RPUSD3Q6P087 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
RPUSD3Q6P087 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
RPUSD3Q6P087 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
RPUSD3Q6P087 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RPUSD3Q6P087 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
RPUSD3Q6P087 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RPUSD3Q6P087 LINC01003-201ENST00000564834 1764 ntBASIC21.94■■□□□ 1.1
RPUSD3Q6P087 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
RPUSD3Q6P087 KRT18P24-201ENST00000344739 1156 ntBASIC21.94■■□□□ 1.1
RPUSD3Q6P087 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RPUSD3Q6P087 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.94■■□□□ 1.1
RPUSD3Q6P087 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
RPUSD3Q6P087 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RPUSD3Q6P087 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPUSD3Q6P087 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RPUSD3Q6P087 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RPUSD3Q6P087 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
RPUSD3Q6P087 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RPUSD3Q6P087 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RPUSD3Q6P087 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
RPUSD3Q6P087 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPUSD3Q6P087 KRT125P-201ENST00000546827 989 ntBASIC21.92■■□□□ 1.1
RPUSD3Q6P087 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.92■■□□□ 1.1
RPUSD3Q6P087 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RPUSD3Q6P087 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 BX664725.1-201ENST00000438252 379 ntBASIC21.91■■□□□ 1.1
RPUSD3Q6P087 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.91■■□□□ 1.1
RPUSD3Q6P087 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
RPUSD3Q6P087 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.9■■□□□ 1.1
RPUSD3Q6P087 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
RPUSD3Q6P087 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
RPUSD3Q6P087 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.9■■□□□ 1.1
RPUSD3Q6P087 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
RPUSD3Q6P087 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RPUSD3Q6P087 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.9■■□□□ 1.1
RPUSD3Q6P087 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RPUSD3Q6P087 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.89■■□□□ 1.09
RPUSD3Q6P087 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.89■■□□□ 1.09
RPUSD3Q6P087 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
RPUSD3Q6P087 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RPUSD3Q6P087 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
RPUSD3Q6P087 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
RPUSD3Q6P087 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.09
RPUSD3Q6P087 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPUSD3Q6P087 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPUSD3Q6P087 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
RPUSD3Q6P087 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms