Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SOX3P41225 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
SOX3P41225 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.49■■□□□ 1.19
SOX3P41225 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SOX3P41225 AL033527.3-201ENST00000566366 1196 ntBASIC22.49■■□□□ 1.19
SOX3P41225 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
SOX3P41225 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SOX3P41225 AC129492.7-201ENST00000622992 756 ntBASIC22.49■■□□□ 1.19
SOX3P41225 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
SOX3P41225 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.48■■□□□ 1.19
SOX3P41225 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SOX3P41225 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
SOX3P41225 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SOX3P41225 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SOX3P41225 AC004987.1-201ENST00000428627 508 ntBASIC22.48■■□□□ 1.19
SOX3P41225 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SOX3P41225 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SOX3P41225 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SOX3P41225 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
SOX3P41225 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
SOX3P41225 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SOX3P41225 ATP5G2P3-201ENST00000429083 425 ntBASIC22.47■■□□□ 1.19
SOX3P41225 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SOX3P41225 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SOX3P41225 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.46■■□□□ 1.19
SOX3P41225 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SOX3P41225 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
SOX3P41225 TSPY13P-201ENST00000338964 914 ntBASIC22.45■■□□□ 1.18
SOX3P41225 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
SOX3P41225 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
SOX3P41225 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.45■■□□□ 1.18
SOX3P41225 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
SOX3P41225 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SOX3P41225 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SOX3P41225 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
SOX3P41225 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SOX3P41225 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.44■■□□□ 1.18
SOX3P41225 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.44■■□□□ 1.18
SOX3P41225 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.44■■□□□ 1.18
SOX3P41225 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
SOX3P41225 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.44■■□□□ 1.18
SOX3P41225 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
SOX3P41225 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SOX3P41225 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
SOX3P41225 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SOX3P41225 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
SOX3P41225 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
SOX3P41225 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.43■■□□□ 1.18
SOX3P41225 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SOX3P41225 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SOX3P41225 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.43■■□□□ 1.18
SOX3P41225 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
SOX3P41225 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SOX3P41225 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
SOX3P41225 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.42■■□□□ 1.18
SOX3P41225 DUX4L9-201ENST00000449051 1259 ntBASIC22.42■■□□□ 1.18
SOX3P41225 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SOX3P41225 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
SOX3P41225 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
SOX3P41225 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
SOX3P41225 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SOX3P41225 SPCS2P3-201ENST00000500401 656 ntBASIC22.41■■□□□ 1.18
SOX3P41225 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SOX3P41225 DUX4L18-201ENST00000553347 1267 ntBASIC22.41■■□□□ 1.18
SOX3P41225 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.41■■□□□ 1.18
SOX3P41225 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX3P41225 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX3P41225 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.4■■□□□ 1.18
SOX3P41225 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
SOX3P41225 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SOX3P41225 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.4■■□□□ 1.18
SOX3P41225 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX3P41225 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.4■■□□□ 1.18
SOX3P41225 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
SOX3P41225 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SOX3P41225 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SOX3P41225 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
SOX3P41225 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SOX3P41225 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
SOX3P41225 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SOX3P41225 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.39■■□□□ 1.17
SOX3P41225 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.38■■□□□ 1.17
SOX3P41225 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX3P41225 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.38■■□□□ 1.17
SOX3P41225 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.38■■□□□ 1.17
SOX3P41225 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX3P41225 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.38■■□□□ 1.17
SOX3P41225 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.38■■□□□ 1.17
SOX3P41225 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX3P41225 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SOX3P41225 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SOX3P41225 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SOX3P41225 AC093323.1-202ENST00000635031 2045 ntBASIC22.37■■□□□ 1.17
SOX3P41225 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SOX3P41225 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SOX3P41225 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SOX3P41225 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
SOX3P41225 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SOX3P41225 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.36■■□□□ 1.17
SOX3P41225 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms