Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL8A1P27658 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL8A1P27658 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.2■□□□□ 0.98
COL8A1P27658 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.2■□□□□ 0.98
COL8A1P27658 AC133561.4-201ENST00000566112 224 ntBASIC21.2■□□□□ 0.98
COL8A1P27658 MIR3621-201ENST00000580529 85 ntBASIC21.2■□□□□ 0.98
COL8A1P27658 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL8A1P27658 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL8A1P27658 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.19■□□□□ 0.98
COL8A1P27658 AC022616.5-201ENST00000518796 181 ntBASIC21.19■□□□□ 0.98
COL8A1P27658 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.19■□□□□ 0.98
COL8A1P27658 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.19■□□□□ 0.98
COL8A1P27658 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
COL8A1P27658 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.18■□□□□ 0.98
COL8A1P27658 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.18■□□□□ 0.98
COL8A1P27658 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL8A1P27658 AC135279.3-201ENST00000610945 1311 ntBASIC21.18■□□□□ 0.98
COL8A1P27658 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL8A1P27658 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL8A1P27658 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL8A1P27658 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.17■□□□□ 0.98
COL8A1P27658 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.17■□□□□ 0.98
COL8A1P27658 MIR5787-201ENST00000611784 55 ntBASIC21.17■□□□□ 0.98
COL8A1P27658 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL8A1P27658 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.16■□□□□ 0.98
COL8A1P27658 AC120024.1-201ENST00000562672 995 ntBASIC21.16■□□□□ 0.98
COL8A1P27658 AC142381.2-201ENST00000566120 298 ntBASIC21.16■□□□□ 0.98
COL8A1P27658 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.16■□□□□ 0.98
COL8A1P27658 AC010997.5-201ENST00000609182 354 ntBASIC21.16■□□□□ 0.98
COL8A1P27658 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.16■□□□□ 0.98
COL8A1P27658 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL8A1P27658 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL8A1P27658 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
COL8A1P27658 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL8A1P27658 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL8A1P27658 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.15■□□□□ 0.98
COL8A1P27658 PBX2P1-201ENST00000493219 1291 ntBASIC21.14■□□□□ 0.97
COL8A1P27658 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.14■□□□□ 0.97
COL8A1P27658 AL356740.2-201ENST00000601559 647 ntBASIC21.14■□□□□ 0.97
COL8A1P27658 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.14■□□□□ 0.97
COL8A1P27658 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL8A1P27658 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL8A1P27658 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.13■□□□□ 0.97
COL8A1P27658 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.13■□□□□ 0.97
COL8A1P27658 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL8A1P27658 WHAMMP3-201ENST00000611636 1609 ntBASIC21.13■□□□□ 0.97
COL8A1P27658 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL8A1P27658 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
COL8A1P27658 MIR6724-1-201ENST00000616420 92 ntBASIC21.12■□□□□ 0.97
COL8A1P27658 MIR6724-2-201ENST00000616483 92 ntBASIC21.12■□□□□ 0.97
COL8A1P27658 MIR6724-4-201ENST00000617390 92 ntBASIC21.12■□□□□ 0.97
COL8A1P27658 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL8A1P27658 MIR6724-3-201ENST00000622482 92 ntBASIC21.12■□□□□ 0.97
COL8A1P27658 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL8A1P27658 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
COL8A1P27658 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
COL8A1P27658 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
COL8A1P27658 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.11■□□□□ 0.97
COL8A1P27658 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL8A1P27658 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.11■□□□□ 0.97
COL8A1P27658 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
COL8A1P27658 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL8A1P27658 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL8A1P27658 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL8A1P27658 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.1■□□□□ 0.97
COL8A1P27658 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL8A1P27658 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.1■□□□□ 0.97
COL8A1P27658 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL8A1P27658 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.1■□□□□ 0.97
COL8A1P27658 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
COL8A1P27658 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL8A1P27658 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.1■□□□□ 0.97
COL8A1P27658 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.1■□□□□ 0.97
COL8A1P27658 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.1■□□□□ 0.97
COL8A1P27658 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.09■□□□□ 0.97
COL8A1P27658 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL8A1P27658 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.09■□□□□ 0.97
COL8A1P27658 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL8A1P27658 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL8A1P27658 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL8A1P27658 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.08■□□□□ 0.97
COL8A1P27658 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
COL8A1P27658 MTDHP2-201ENST00000601468 714 ntBASIC21.08■□□□□ 0.97
COL8A1P27658 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.08■□□□□ 0.96
COL8A1P27658 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.07■□□□□ 0.96
COL8A1P27658 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.07■□□□□ 0.96
COL8A1P27658 AC106739.1-201ENST00000617035 715 ntBASIC21.07■□□□□ 0.96
COL8A1P27658 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.07■□□□□ 0.96
COL8A1P27658 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL8A1P27658 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL8A1P27658 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.07■□□□□ 0.96
COL8A1P27658 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COL8A1P27658 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL8A1P27658 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.06■□□□□ 0.96
COL8A1P27658 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.06■□□□□ 0.96
COL8A1P27658 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL8A1P27658 AL512631.2-201ENST00000604634 923 ntBASIC21.06■□□□□ 0.96
COL8A1P27658 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL8A1P27658 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
COL8A1P27658 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms