Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 AC055876.2-201ENST00000531834 546 ntBASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 CTBP2P3-201ENST00000585629 1255 ntBASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 MIR6775-201ENST00000617557 69 ntBASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 COX11-210ENST00000639671 696 ntBASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 AC073439.1-201ENST00000624121 1774 ntBASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.07■□□□□ 0.8
ZNF541Q9H0D2 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 KRT223P-202ENST00000449164 1292 ntBASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 ELK1P1-201ENST00000485699 580 ntBASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 AL138781.2-201ENST00000617896 1843 ntBASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZNF541Q9H0D2 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 RNA5SP410-201ENST00000516285 106 ntBASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 MIR4538-201ENST00000581377 78 ntBASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC20.05■□□□□ 0.8
ZNF541Q9H0D2 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 ANKRD19P-201ENST00000338192 862 ntBASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 SLC25A1P3-201ENST00000395415 828 ntBASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 AC114501.2-201ENST00000439631 535 ntBASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 AC234783.1-201ENST00000441761 496 ntBASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 BNIP3P42-201ENST00000454982 569 ntBASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 BNIP3P29-201ENST00000598302 571 ntBASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.04■□□□□ 0.8
ZNF541Q9H0D2 AC011447.5-201ENST00000616168 564 ntBASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms