Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNGAP1Q96PV0 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNGAP1Q96PV0 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.22■□□□□ 0.67
SYNGAP1Q96PV0 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNGAP1Q96PV0 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 SLC25A1P3-201ENST00000395415 828 ntBASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 LINC01225-203ENST00000563550 1244 ntBASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 AC084121.4-201ENST00000641598 221 ntBASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 AF228730.8-201ENST00000642140 221 ntBASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.21■□□□□ 0.67
SYNGAP1Q96PV0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 AL353732.1-201ENST00000569618 1459 ntBASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 AC093214.1-201ENST00000511688 1107 ntBASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 TUBB3P1-201ENST00000405796 1332 ntBASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNGAP1Q96PV0 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 HCG4-201ENST00000418983 998 ntBASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 AC055876.3-201ENST00000431496 288 ntBASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 KLF2P3-201ENST00000451977 1087 ntBASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 IGHV3-62-201ENST00000520057 340 ntBASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.19■□□□□ 0.66
SYNGAP1Q96PV0 AC138761.1-201ENST00000584393 385 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms