Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4AQ8WYN0 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 AC005052.1-201ENST00000625181 2492 ntBASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 FAM210CP-201ENST00000445714 574 ntBASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 AC092119.3-201ENST00000612618 583 ntBASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.62■□□□□ 0.41
ATG4AQ8WYN0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 ABCD1P5-201ENST00000445663 754 ntBASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 AL358472.4-201ENST00000633140 710 ntBASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 SIGLEC16-201ENST00000599858 1437 ntBASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATG4AQ8WYN0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 CYP2T1P-202ENST00000641596 2535 ntBASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms