Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 PAWRP1-201ENST00000451083 565 ntBASIC19.36■□□□□ 0.69
ATL3Q6DD88 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 AL139424.1-201ENST00000607572 797 ntBASIC19.36■□□□□ 0.69
ATL3Q6DD88 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.36■□□□□ 0.69
ATL3Q6DD88 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATL3Q6DD88 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.35■□□□□ 0.69
ATL3Q6DD88 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.35■□□□□ 0.69
ATL3Q6DD88 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.35■□□□□ 0.69
ATL3Q6DD88 AC064862.7-201ENST00000604520 867 ntBASIC19.35■□□□□ 0.69
ATL3Q6DD88 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.35■□□□□ 0.69
ATL3Q6DD88 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.35■□□□□ 0.69
ATL3Q6DD88 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.35■□□□□ 0.69
ATL3Q6DD88 AL358472.4-201ENST00000633140 710 ntBASIC19.35■□□□□ 0.69
ATL3Q6DD88 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.35■□□□□ 0.69
ATL3Q6DD88 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATL3Q6DD88 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
ATL3Q6DD88 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 NKAPP1-205ENST00000585790 367 ntBASIC19.34■□□□□ 0.69
ATL3Q6DD88 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 AC092119.3-201ENST00000612618 583 ntBASIC19.34■□□□□ 0.69
ATL3Q6DD88 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.34■□□□□ 0.69
ATL3Q6DD88 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ATL3Q6DD88 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
ATL3Q6DD88 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.33■□□□□ 0.69
ATL3Q6DD88 GGT3P-204ENST00000453783 1664 ntBASIC19.33■□□□□ 0.69
ATL3Q6DD88 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
ATL3Q6DD88 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATL3Q6DD88 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.33■□□□□ 0.69
ATL3Q6DD88 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATL3Q6DD88 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATL3Q6DD88 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATL3Q6DD88 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
ATL3Q6DD88 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
ATL3Q6DD88 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms