Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 AGGF1P2-201ENST00000426656 2106 ntBASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 AC084018.2-201ENST00000613093 2607 ntBASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 RNA5SP415-201ENST00000517246 115 ntBASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 TERC-201ENST00000602385 541 ntBASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD3Q3KNS1 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 AC117500.6-201ENST00000624871 588 ntBASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD3Q3KNS1 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 RNF216P1-203ENST00000404404 2427 ntBASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 AP002414.1-201ENST00000391405 1147 ntBASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 AC145285.3-201ENST00000564603 959 ntBASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD3Q3KNS1 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms