Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.12■□□□□ 0.49
SSR1P43307 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.12■□□□□ 0.49
SSR1P43307 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
SSR1P43307 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.12■□□□□ 0.49
SSR1P43307 MIR3180-1-201ENST00000580374 94 ntBASIC18.12■□□□□ 0.49
SSR1P43307 MIR3180-3-201ENST00000584616 94 ntBASIC18.12■□□□□ 0.49
SSR1P43307 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 AD001527.2-201ENST00000622994 785 ntBASIC18.12■□□□□ 0.49
SSR1P43307 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.12■□□□□ 0.49
SSR1P43307 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
SSR1P43307 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.12■□□□□ 0.49
SSR1P43307 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.12■□□□□ 0.49
SSR1P43307 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.12■□□□□ 0.49
SSR1P43307 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSR1P43307 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.11■□□□□ 0.49
SSR1P43307 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.11■□□□□ 0.49
SSR1P43307 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 CICP6-201ENST00000457191 2729 ntBASIC18.11■□□□□ 0.49
SSR1P43307 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.11■□□□□ 0.49
SSR1P43307 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SSR1P43307 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.11■□□□□ 0.49
SSR1P43307 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.11■□□□□ 0.49
SSR1P43307 AC012615.1-201ENST00000565797 1299 ntBASIC18.11■□□□□ 0.49
SSR1P43307 AC138894.3-201ENST00000603787 634 ntBASIC18.11■□□□□ 0.49
SSR1P43307 AC010331.1-201ENST00000611423 582 ntBASIC18.11■□□□□ 0.49
SSR1P43307 AC114341.1-201ENST00000618070 349 ntBASIC18.11■□□□□ 0.49
SSR1P43307 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SSR1P43307 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SSR1P43307 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
SSR1P43307 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SSR1P43307 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.11■□□□□ 0.49
SSR1P43307 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.11■□□□□ 0.49
SSR1P43307 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 AC105020.1-201ENST00000435356 2205 ntBASIC18.11■□□□□ 0.49
SSR1P43307 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.11■□□□□ 0.49
SSR1P43307 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.11■□□□□ 0.49
SSR1P43307 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SSR1P43307 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSR1P43307 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SSR1P43307 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.1■□□□□ 0.49
SSR1P43307 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SSR1P43307 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SSR1P43307 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.1■□□□□ 0.49
SSR1P43307 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.1■□□□□ 0.49
SSR1P43307 AC068587.6-202ENST00000641839 5619 ntBASIC18.1■□□□□ 0.49
SSR1P43307 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
SSR1P43307 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
SSR1P43307 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.1■□□□□ 0.49
SSR1P43307 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SSR1P43307 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.1■□□□□ 0.49
SSR1P43307 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.1■□□□□ 0.49
SSR1P43307 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SSR1P43307 NPAP1P7-201ENST00000613027 823 ntBASIC18.1■□□□□ 0.49
SSR1P43307 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.1■□□□□ 0.49
SSR1P43307 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSR1P43307 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC18.1■□□□□ 0.49
SSR1P43307 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SSR1P43307 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.09■□□□□ 0.49
SSR1P43307 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms