Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC26.68■■□□□ 1.86
CLIP1P30622 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CLIP1P30622 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC26.68■■□□□ 1.86
CLIP1P30622 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC26.68■■□□□ 1.86
CLIP1P30622 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC26.68■■□□□ 1.86
CLIP1P30622 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC26.68■■□□□ 1.86
CLIP1P30622 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CLIP1P30622 AC005498.2-205ENST00000593218 784 ntBASIC26.68■■□□□ 1.86
CLIP1P30622 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC26.68■■□□□ 1.86
CLIP1P30622 LINC00628-201ENST00000628516 1289 ntBASIC26.68■■□□□ 1.86
CLIP1P30622 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
CLIP1P30622 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CLIP1P30622 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC26.68■■□□□ 1.86
CLIP1P30622 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CLIP1P30622 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CLIP1P30622 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC26.68■■□□□ 1.86
CLIP1P30622 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CLIP1P30622 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
CLIP1P30622 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CLIP1P30622 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC26.67■■□□□ 1.86
CLIP1P30622 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CLIP1P30622 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CLIP1P30622 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC26.67■■□□□ 1.86
CLIP1P30622 AC025678.2-201ENST00000562061 970 ntBASIC26.67■■□□□ 1.86
CLIP1P30622 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC26.67■■□□□ 1.86
CLIP1P30622 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
CLIP1P30622 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC26.67■■□□□ 1.86
CLIP1P30622 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC26.67■■□□□ 1.86
CLIP1P30622 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC26.67■■□□□ 1.86
CLIP1P30622 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC26.67■■□□□ 1.86
CLIP1P30622 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC26.67■■□□□ 1.86
CLIP1P30622 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
CLIP1P30622 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CLIP1P30622 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CLIP1P30622 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC26.66■■□□□ 1.86
CLIP1P30622 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC26.66■■□□□ 1.86
CLIP1P30622 WDR53-204ENST00000433160 887 ntTSL 5 BASIC26.66■■□□□ 1.86
CLIP1P30622 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC26.66■■□□□ 1.86
CLIP1P30622 FAM86GP-201ENST00000448322 971 ntBASIC26.66■■□□□ 1.86
CLIP1P30622 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC26.66■■□□□ 1.86
CLIP1P30622 LHX6-205ENST00000464484 666 ntTSL 2 BASIC26.66■■□□□ 1.86
CLIP1P30622 SSH2-211ENST00000590153 570 ntTSL 4 BASIC26.66■■□□□ 1.86
CLIP1P30622 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
CLIP1P30622 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
CLIP1P30622 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC26.66■■□□□ 1.86
CLIP1P30622 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC26.66■■□□□ 1.86
CLIP1P30622 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC26.66■■□□□ 1.86
CLIP1P30622 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC26.66■■□□□ 1.86
CLIP1P30622 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CLIP1P30622 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CLIP1P30622 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CLIP1P30622 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC26.65■■□□□ 1.86
CLIP1P30622 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
CLIP1P30622 CD99-202ENST00000381180 530 ntTSL 2 BASIC26.65■■□□□ 1.86
CLIP1P30622 PTMS-202ENST00000389462 773 ntTSL 2 BASIC26.65■■□□□ 1.86
CLIP1P30622 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC26.65■■□□□ 1.86
CLIP1P30622 AP000842.3-202ENST00000569238 1080 ntBASIC26.65■■□□□ 1.86
CLIP1P30622 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
CLIP1P30622 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CLIP1P30622 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CLIP1P30622 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CLIP1P30622 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC26.65■■□□□ 1.86
CLIP1P30622 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CLIP1P30622 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
CLIP1P30622 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
CLIP1P30622 FOXO1B-201ENST00000504678 1527 ntBASIC26.65■■□□□ 1.86
CLIP1P30622 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC26.65■■□□□ 1.86
CLIP1P30622 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC26.65■■□□□ 1.86
CLIP1P30622 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
CLIP1P30622 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC26.65■■□□□ 1.86
CLIP1P30622 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CLIP1P30622 AC142381.1-201ENST00000426099 345 ntBASIC26.65■■□□□ 1.86
CLIP1P30622 AC005237.2-201ENST00000434368 219 ntBASIC26.65■■□□□ 1.86
CLIP1P30622 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC26.65■■□□□ 1.86
CLIP1P30622 AC008267.7-201ENST00000624570 1194 ntBASIC26.65■■□□□ 1.86
CLIP1P30622 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC26.65■■□□□ 1.86
CLIP1P30622 AL139011.1-202ENST00000642063 584 ntBASIC26.65■■□□□ 1.86
CLIP1P30622 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CLIP1P30622 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC26.64■■□□□ 1.86
CLIP1P30622 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CLIP1P30622 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
CLIP1P30622 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CLIP1P30622 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CLIP1P30622 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC26.64■■□□□ 1.86
CLIP1P30622 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC26.64■■□□□ 1.86
CLIP1P30622 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CLIP1P30622 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC26.64■■□□□ 1.85
CLIP1P30622 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC26.64■■□□□ 1.85
CLIP1P30622 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC26.64■■□□□ 1.85
CLIP1P30622 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms