Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
COL4A5P29400 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A5P29400 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL4A5P29400 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL4A5P29400 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL4A5P29400 AC055876.2-201ENST00000531834 546 ntBASIC20.06■□□□□ 0.8
COL4A5P29400 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.06■□□□□ 0.8
COL4A5P29400 AL512343.1-201ENST00000605837 169 ntBASIC20.06■□□□□ 0.8
COL4A5P29400 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
COL4A5P29400 RPSAP52-203ENST00000622976 1023 ntBASIC20.06■□□□□ 0.8
COL4A5P29400 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 SNX33P1-201ENST00000592116 1762 ntBASIC20.06■□□□□ 0.8
COL4A5P29400 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A5P29400 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A5P29400 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL4A5P29400 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL4A5P29400 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.05■□□□□ 0.8
COL4A5P29400 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL4A5P29400 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.05■□□□□ 0.8
COL4A5P29400 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A5P29400 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.05■□□□□ 0.8
COL4A5P29400 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A5P29400 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A5P29400 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A5P29400 AC004408.2-201ENST00000623613 2777 ntBASIC20.05■□□□□ 0.8
COL4A5P29400 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A5P29400 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A5P29400 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A5P29400 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
COL4A5P29400 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
COL4A5P29400 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.04■□□□□ 0.8
COL4A5P29400 AC245100.3-201ENST00000441281 285 ntBASIC20.04■□□□□ 0.8
COL4A5P29400 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.04■□□□□ 0.8
COL4A5P29400 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.04■□□□□ 0.8
COL4A5P29400 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A5P29400 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL4A5P29400 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.04■□□□□ 0.8
COL4A5P29400 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL4A5P29400 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A5P29400 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A5P29400 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A5P29400 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A5P29400 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A5P29400 SRD5A3P1-201ENST00000603021 949 ntBASIC20.03■□□□□ 0.8
COL4A5P29400 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A5P29400 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 AL021920.2-201ENST00000624828 1351 ntBASIC20.03■□□□□ 0.8
COL4A5P29400 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A5P29400 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
COL4A5P29400 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A5P29400 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A5P29400 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL4A5P29400 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 REXO1L6P-201ENST00000603433 1515 ntBASIC20.03■□□□□ 0.8
COL4A5P29400 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A5P29400 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A5P29400 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A5P29400 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20.03■□□□□ 0.8
COL4A5P29400 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A5P29400 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A5P29400 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A5P29400 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
COL4A5P29400 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms