Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC13.21□□□□□ -0.3
CXCL1P09341 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 AC093525.9-201ENST00000624961 1746 ntBASIC13.2□□□□□ -0.3
CXCL1P09341 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 APTR-205ENST00000447009 902 ntTSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC13.2□□□□□ -0.3
CXCL1P09341 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC13.2□□□□□ -0.3
CXCL1P09341 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC13.2□□□□□ -0.3
CXCL1P09341 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC13.2□□□□□ -0.3
CXCL1P09341 AC073648.6-201ENST00000641589 218 ntBASIC13.2□□□□□ -0.3
CXCL1P09341 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 CICP24-201ENST00000605464 2705 ntBASIC13.2□□□□□ -0.3
CXCL1P09341 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 LINC01311-201ENST00000565162 1445 ntBASIC13.2□□□□□ -0.3
CXCL1P09341 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC13.2□□□□□ -0.3
CXCL1P09341 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.2□□□□□ -0.3
CXCL1P09341 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CXCL1P09341 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.19□□□□□ -0.3
CXCL1P09341 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CXCL1P09341 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CXCL1P09341 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.19□□□□□ -0.3
CXCL1P09341 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CXCL1P09341 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.19□□□□□ -0.3
CXCL1P09341 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
CXCL1P09341 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC13.19□□□□□ -0.3
CXCL1P09341 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC13.19□□□□□ -0.3
CXCL1P09341 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC13.19□□□□□ -0.3
CXCL1P09341 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC13.19□□□□□ -0.3
CXCL1P09341 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
CXCL1P09341 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC13.19□□□□□ -0.3
CXCL1P09341 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC13.19□□□□□ -0.3
CXCL1P09341 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC13.19□□□□□ -0.3
CXCL1P09341 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC13.19□□□□□ -0.3
CXCL1P09341 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC13.19□□□□□ -0.3
CXCL1P09341 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.19□□□□□ -0.3
CXCL1P09341 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CXCL1P09341 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms