Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 METTL26-204ENST00000397665 558 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A1P02462 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL4A1P02462 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL4A1P02462 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.49■□□□□ 0.87
COL4A1P02462 AC027369.6-201ENST00000525520 931 ntBASIC20.49■□□□□ 0.87
COL4A1P02462 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.49■□□□□ 0.87
COL4A1P02462 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A1P02462 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
COL4A1P02462 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL4A1P02462 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A1P02462 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A1P02462 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
COL4A1P02462 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL4A1P02462 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL4A1P02462 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL4A1P02462 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A1P02462 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A1P02462 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A1P02462 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A1P02462 AC013467.2-201ENST00000605472 835 ntBASIC20.48■□□□□ 0.87
COL4A1P02462 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A1P02462 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL4A1P02462 AC139713.2-201ENST00000641328 2723 ntBASIC20.48■□□□□ 0.87
COL4A1P02462 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
COL4A1P02462 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.48■□□□□ 0.87
COL4A1P02462 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
COL4A1P02462 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL4A1P02462 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A1P02462 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 SPTLC1P1-201ENST00000447199 261 ntBASIC20.48■□□□□ 0.87
COL4A1P02462 SPDYE18-201ENST00000510091 1050 ntBASIC20.48■□□□□ 0.87
COL4A1P02462 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A1P02462 WASH4P-201ENST00000564273 1246 ntBASIC20.48■□□□□ 0.87
COL4A1P02462 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
COL4A1P02462 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A1P02462 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.48■□□□□ 0.87
COL4A1P02462 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.47■□□□□ 0.87
COL4A1P02462 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A1P02462 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A1P02462 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A1P02462 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A1P02462 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A1P02462 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A1P02462 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
COL4A1P02462 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A1P02462 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.47■□□□□ 0.87
COL4A1P02462 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 PUDP-206ENST00000540122 825 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 AC003101.2-201ENST00000612557 442 ntBASIC20.47■□□□□ 0.87
COL4A1P02462 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
COL4A1P02462 AP001350.2-201ENST00000625104 1094 ntBASIC20.47■□□□□ 0.87
COL4A1P02462 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A1P02462 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A1P02462 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A1P02462 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.46■□□□□ 0.87
COL4A1P02462 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
COL4A1P02462 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 AC006277.1-201ENST00000624348 1610 ntBASIC20.46■□□□□ 0.87
COL4A1P02462 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A1P02462 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC20.46■□□□□ 0.87
COL4A1P02462 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.46■□□□□ 0.87
COL4A1P02462 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL4A1P02462 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.46■□□□□ 0.87
COL4A1P02462 KRT18P34-201ENST00000488218 1270 ntBASIC20.46■□□□□ 0.87
COL4A1P02462 AC009407.1-201ENST00000568958 598 ntBASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms