Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CNOT4O95628 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.11■□□□□ 0.01
CNOT4O95628 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CNOT4O95628 GPX1P2-201ENST00000429271 606 ntBASIC15.11■□□□□ 0.01
CNOT4O95628 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.11■□□□□ 0.01
CNOT4O95628 RNA5SP416-201ENST00000516838 111 ntBASIC15.11■□□□□ 0.01
CNOT4O95628 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CNOT4O95628 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.11■□□□□ 0.01
CNOT4O95628 AC040169.1-201ENST00000565382 521 ntBASIC15.11■□□□□ 0.01
CNOT4O95628 AP001160.2-201ENST00000596071 487 ntBASIC15.11■□□□□ 0.01
CNOT4O95628 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.11■□□□□ 0.01
CNOT4O95628 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.11■□□□□ 0.01
CNOT4O95628 AC116353.5-201ENST00000638148 1699 ntBASIC15.11■□□□□ 0.01
CNOT4O95628 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.11■□□□□ 0.01
CNOT4O95628 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CNOT4O95628 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CNOT4O95628 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CNOT4O95628 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.11■□□□□ 0.01
CNOT4O95628 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.1■□□□□ 0.01
CNOT4O95628 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.1■□□□□ 0.01
CNOT4O95628 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.1■□□□□ 0.01
CNOT4O95628 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
CNOT4O95628 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CNOT4O95628 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.1■□□□□ 0.01
CNOT4O95628 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.1■□□□□ 0.01
CNOT4O95628 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.1■□□□□ 0.01
CNOT4O95628 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.1■□□□□ 0.01
CNOT4O95628 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.1■□□□□ 0.01
CNOT4O95628 VN2R19P-201ENST00000442399 1052 ntBASIC15.1■□□□□ 0.01
CNOT4O95628 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.1■□□□□ 0.01
CNOT4O95628 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.1■□□□□ 0.01
CNOT4O95628 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.1■□□□□ 0.01
CNOT4O95628 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 EGFEM1P-202ENST00000431685 1563 ntBASIC15.1■□□□□ 0.01
CNOT4O95628 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CNOT4O95628 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.09■□□□□ 0.01
CNOT4O95628 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.09■□□□□ 0.01
CNOT4O95628 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.09■□□□□ 0.01
CNOT4O95628 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CNOT4O95628 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.09■□□□□ 0.01
CNOT4O95628 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
CNOT4O95628 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CNOT4O95628 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CNOT4O95628 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CNOT4O95628 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.09■□□□□ 0.01
CNOT4O95628 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CNOT4O95628 YBX2P1-201ENST00000394192 760 ntBASIC15.09■□□□□ 0.01
CNOT4O95628 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.09■□□□□ 0.01
CNOT4O95628 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.09■□□□□ 0.01
CNOT4O95628 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.09■□□□□ 0.01
CNOT4O95628 AC112482.1-201ENST00000492080 688 ntBASIC15.09■□□□□ 0.01
CNOT4O95628 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.09■□□□□ 0.01
CNOT4O95628 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.09■□□□□ 0.01
CNOT4O95628 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CNOT4O95628 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.09■□□□□ 0.01
CNOT4O95628 AC027796.2-201ENST00000575326 344 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms