Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.35■■□□□ 1.01
NPHP1O15259 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 OVCH1-AS1-204ENST00000641955 5529 ntBASIC21.35■■□□□ 1.01
NPHP1O15259 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC21.34■■□□□ 1.01
NPHP1O15259 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.34■■□□□ 1.01
NPHP1O15259 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.34■■□□□ 1.01
NPHP1O15259 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
NPHP1O15259 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.34■■□□□ 1.01
NPHP1O15259 SPDYE7P-202ENST00000420373 878 ntBASIC21.34■■□□□ 1.01
NPHP1O15259 TREML5P-201ENST00000421694 576 ntBASIC21.34■■□□□ 1.01
NPHP1O15259 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.34■■□□□ 1.01
NPHP1O15259 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.34■■□□□ 1.01
NPHP1O15259 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.34■■□□□ 1.01
NPHP1O15259 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.34■■□□□ 1.01
NPHP1O15259 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.34■■□□□ 1.01
NPHP1O15259 AC087641.1-201ENST00000557561 1021 ntBASIC21.34■■□□□ 1.01
NPHP1O15259 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.34■■□□□ 1.01
NPHP1O15259 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 AC005412.3-201ENST00000580309 715 ntBASIC21.34■■□□□ 1.01
NPHP1O15259 LINC01451-201ENST00000623792 534 ntBASIC21.34■■□□□ 1.01
NPHP1O15259 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC21.34■■□□□ 1.01
NPHP1O15259 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC21.34■■□□□ 1.01
NPHP1O15259 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
NPHP1O15259 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 FO538757.1-201ENST00000623083 1397 ntBASIC21.34■■□□□ 1.01
NPHP1O15259 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
NPHP1O15259 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
NPHP1O15259 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPHP1O15259 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
NPHP1O15259 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP1O15259 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
NPHP1O15259 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC21.33■■□□□ 1.01
NPHP1O15259 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
NPHP1O15259 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.33■■□□□ 1.01
NPHP1O15259 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.33■■□□□ 1.01
NPHP1O15259 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
NPHP1O15259 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP1O15259 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.33■■□□□ 1.01
NPHP1O15259 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.33■■□□□ 1.01
NPHP1O15259 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
NPHP1O15259 HMGA1P7-201ENST00000406908 502 ntBASIC21.33■■□□□ 1.01
NPHP1O15259 AC002472.2-201ENST00000442739 958 ntBASIC21.33■■□□□ 1.01
NPHP1O15259 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.33■■□□□ 1.01
NPHP1O15259 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
NPHP1O15259 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NPHP1O15259 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
NPHP1O15259 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
NPHP1O15259 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.33■■□□□ 1
NPHP1O15259 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.33■■□□□ 1
NPHP1O15259 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
NPHP1O15259 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.33■■□□□ 1
NPHP1O15259 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC21.33■■□□□ 1
NPHP1O15259 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
NPHP1O15259 AL133373.2-201ENST00000623187 2828 ntBASIC21.33■■□□□ 1
NPHP1O15259 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP1O15259 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP1O15259 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.32■■□□□ 1
NPHP1O15259 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.32■■□□□ 1
NPHP1O15259 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP1O15259 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP1O15259 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.32■■□□□ 1
NPHP1O15259 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC21.32■■□□□ 1
NPHP1O15259 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC21.32■■□□□ 1
NPHP1O15259 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP1O15259 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP1O15259 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.32■■□□□ 1
NPHP1O15259 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPHP1O15259 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms