Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 AL049757.1-201ENST00000616842 1596 ntBASIC14.9□□□□□ -0.02
NKX3-1Q99801 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 AC093458.2-201ENST00000623150 629 ntBASIC14.89□□□□□ -0.03
NKX3-1Q99801 AC124864.1-201ENST00000623408 392 ntBASIC14.89□□□□□ -0.03
NKX3-1Q99801 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX3-1Q99801 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX3-1Q99801 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 AC091607.1-201ENST00000490318 1060 ntBASIC14.88□□□□□ -0.03
NKX3-1Q99801 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 AC097374.2-201ENST00000618617 1306 ntBASIC14.88□□□□□ -0.03
NKX3-1Q99801 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC14.88□□□□□ -0.03
NKX3-1Q99801 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX3-1Q99801 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
NKX3-1Q99801 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
NKX3-1Q99801 EGFEM1P-202ENST00000431685 1563 ntBASIC14.87□□□□□ -0.03
NKX3-1Q99801 AC125634.1-201ENST00000438758 1403 ntBASIC14.87□□□□□ -0.03
NKX3-1Q99801 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms