Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SLC25A1P3-201ENST00000395415 828 ntBASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 PMS2P1-201ENST00000431037 1228 ntBASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 AC009947.1-201ENST00000444350 727 ntBASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 AC023511.2-201ENST00000618803 211 ntBASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 MED15P5-201ENST00000423150 992 ntBASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AC136632.2-201ENST00000512891 861 ntBASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AC092865.5-201ENST00000545435 363 ntBASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AC006557.2-201ENST00000592985 1240 ntBASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AL139424.1-201ENST00000607572 797 ntBASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AL589182.2-201ENST00000619332 1049 ntBASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 AC005593.1-201ENST00000624894 515 ntBASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4CQ96CF2 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP4CQ96CF2 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP4CQ96CF2 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.27■□□□□ 0.83
CHMP4CQ96CF2 NCF1C-201ENST00000438382 1427 ntBASIC20.27■□□□□ 0.83
CHMP4CQ96CF2 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP4CQ96CF2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CHMP4CQ96CF2 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP4CQ96CF2 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP4CQ96CF2 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 AC108751.1-201ENST00000490852 363 ntBASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 AC145285.3-201ENST00000564603 959 ntBASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4CQ96CF2 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 PTCHD3P3-201ENST00000403073 906 ntBASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 AC023274.1-201ENST00000418278 595 ntBASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms