Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 AC142381.1-201ENST00000426099 345 ntBASIC19.48■□□□□ 0.71
HMGCS2P54868 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.48■□□□□ 0.71
HMGCS2P54868 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGCS2P54868 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.48■□□□□ 0.71
HMGCS2P54868 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
HMGCS2P54868 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGCS2P54868 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGCS2P54868 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGCS2P54868 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HMGCS2P54868 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 AC063926.2-201ENST00000623766 1308 ntBASIC19.48■□□□□ 0.71
HMGCS2P54868 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.48■□□□□ 0.71
HMGCS2P54868 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.47■□□□□ 0.71
HMGCS2P54868 HCG11-201ENST00000411553 5696 ntBASIC19.47■□□□□ 0.71
HMGCS2P54868 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.47■□□□□ 0.71
HMGCS2P54868 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.47■□□□□ 0.71
HMGCS2P54868 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGCS2P54868 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGCS2P54868 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19.47■□□□□ 0.71
HMGCS2P54868 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGCS2P54868 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.47■□□□□ 0.71
HMGCS2P54868 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.47■□□□□ 0.71
HMGCS2P54868 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.47■□□□□ 0.71
HMGCS2P54868 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.47■□□□□ 0.71
HMGCS2P54868 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
HMGCS2P54868 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
HMGCS2P54868 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
HMGCS2P54868 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
HMGCS2P54868 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGCS2P54868 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HMGCS2P54868 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGCS2P54868 AC008764.6-201ENST00000595909 2069 ntBASIC19.47■□□□□ 0.71
HMGCS2P54868 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGCS2P54868 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGCS2P54868 AL021920.2-201ENST00000624828 1351 ntBASIC19.46■□□□□ 0.71
HMGCS2P54868 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
HMGCS2P54868 AC241585.1-201ENST00000433527 519 ntBASIC19.46■□□□□ 0.71
HMGCS2P54868 AC004890.2-204ENST00000481968 304 ntBASIC19.46■□□□□ 0.71
HMGCS2P54868 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGCS2P54868 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.46■□□□□ 0.71
HMGCS2P54868 MIR4492-201ENST00000581627 80 ntBASIC19.46■□□□□ 0.71
HMGCS2P54868 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGCS2P54868 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGCS2P54868 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGCS2P54868 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGCS2P54868 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGCS2P54868 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGCS2P54868 AC116353.5-201ENST00000638148 1699 ntBASIC19.46■□□□□ 0.71
HMGCS2P54868 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGCS2P54868 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGCS2P54868 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
HMGCS2P54868 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGCS2P54868 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.45■□□□□ 0.7
HMGCS2P54868 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.45■□□□□ 0.7
HMGCS2P54868 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGCS2P54868 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGCS2P54868 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGCS2P54868 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGCS2P54868 LINC00895-201ENST00000629028 1637 ntBASIC19.45■□□□□ 0.7
HMGCS2P54868 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGCS2P54868 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.45■□□□□ 0.7
HMGCS2P54868 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.45■□□□□ 0.7
HMGCS2P54868 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.45■□□□□ 0.7
HMGCS2P54868 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HMGCS2P54868 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.45■□□□□ 0.7
HMGCS2P54868 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC19.45■□□□□ 0.7
HMGCS2P54868 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.45■□□□□ 0.7
HMGCS2P54868 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms