Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.01□□□□□ -0.33
HLA-DMBP28068 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 AC011270.2-201ENST00000624293 2550 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC13□□□□□ -0.33
HLA-DMBP28068 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
HLA-DMBP28068 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 FRMD8P1-201ENST00000440433 1524 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 TP73-AS1-210ENST00000637775 1455 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13□□□□□ -0.33
HLA-DMBP28068 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DMBP28068 AC246785.2-201ENST00000432512 513 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HLA-DMBP28068 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC13□□□□□ -0.33
HLA-DMBP28068 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13□□□□□ -0.33
HLA-DMBP28068 AP000867.3-201ENST00000524675 377 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
HLA-DMBP28068 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DMBP28068 MIR3180-1-201ENST00000580374 94 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 MIR3180-3-201ENST00000584616 94 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 AC011467.2-201ENST00000598425 242 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC13□□□□□ -0.33
HLA-DMBP28068 AL691432.3-201ENST00000621860 400 ntBASIC13□□□□□ -0.33
HLA-DMBP28068 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HLA-DMBP28068 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13□□□□□ -0.33
HLA-DMBP28068 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
HLA-DMBP28068 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC13□□□□□ -0.33
HLA-DMBP28068 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13□□□□□ -0.33
HLA-DMBP28068 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HLA-DMBP28068 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13□□□□□ -0.33
HLA-DMBP28068 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HLA-DMBP28068 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13□□□□□ -0.33
HLA-DMBP28068 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 STK24-203ENST00000397517 4578 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 DOC2GP-204ENST00000639052 2548 ntBASIC12.99□□□□□ -0.33
HLA-DMBP28068 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 AC233702.3-201ENST00000578656 1387 ntBASIC12.99□□□□□ -0.33
HLA-DMBP28068 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 TOB2P1-201ENST00000469761 992 ntBASIC12.99□□□□□ -0.33
HLA-DMBP28068 AC096582.2-201ENST00000510860 516 ntBASIC12.99□□□□□ -0.33
HLA-DMBP28068 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 CIB2-208ENST00000560618 804 ntTSL 2 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 AD001527.2-201ENST00000622994 785 ntBASIC12.99□□□□□ -0.33
HLA-DMBP28068 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
HLA-DMBP28068 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
HLA-DMBP28068 PCDHB17P-201ENST00000539533 2393 ntBASIC12.99□□□□□ -0.33
HLA-DMBP28068 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms