Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RPS15-212ENST00000593052 629 ntTSL 2 BASIC21.08■□□□□ 0.97
COL5A3P25940 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC21.08■□□□□ 0.97
COL5A3P25940 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC21.08■□□□□ 0.97
COL5A3P25940 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 AL671710.1-201ENST00000610245 2349 ntBASIC21.08■□□□□ 0.96
COL5A3P25940 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL5A3P25940 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21.08■□□□□ 0.96
COL5A3P25940 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL5A3P25940 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC21.08■□□□□ 0.96
COL5A3P25940 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
COL5A3P25940 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.07■□□□□ 0.96
COL5A3P25940 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
COL5A3P25940 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 RN7SL618P-201ENST00000477850 296 ntBASIC21.07■□□□□ 0.96
COL5A3P25940 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC21.07■□□□□ 0.96
COL5A3P25940 FHL2-212ENST00000607522 759 ntTSL 2 BASIC21.07■□□□□ 0.96
COL5A3P25940 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.07■□□□□ 0.96
COL5A3P25940 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC21.07■□□□□ 0.96
COL5A3P25940 RPS19-201ENST00000221975 500 ntTSL 3 BASIC21.07■□□□□ 0.96
COL5A3P25940 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 AL512384.1-201ENST00000406683 331 ntBASIC21.07■□□□□ 0.96
COL5A3P25940 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A3P25940 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC21.07■□□□□ 0.96
COL5A3P25940 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.07■□□□□ 0.96
COL5A3P25940 AL353779.1-201ENST00000434793 351 ntBASIC21.07■□□□□ 0.96
COL5A3P25940 AC093724.1-201ENST00000448659 1027 ntBASIC21.07■□□□□ 0.96
COL5A3P25940 AC022494.1-201ENST00000466044 728 ntBASIC21.07■□□□□ 0.96
COL5A3P25940 AC093004.1-201ENST00000508850 424 ntBASIC21.07■□□□□ 0.96
COL5A3P25940 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC21.07■□□□□ 0.96
COL5A3P25940 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC21.07■□□□□ 0.96
COL5A3P25940 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
COL5A3P25940 CHCHD2P3-201ENST00000603038 451 ntBASIC21.07■□□□□ 0.96
COL5A3P25940 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC21.06■□□□□ 0.96
COL5A3P25940 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 KRT8P12-202ENST00000472924 1397 ntBASIC21.06■□□□□ 0.96
COL5A3P25940 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.06■□□□□ 0.96
COL5A3P25940 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC21.06■□□□□ 0.96
COL5A3P25940 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC21.06■□□□□ 0.96
COL5A3P25940 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC21.06■□□□□ 0.96
COL5A3P25940 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC21.06■□□□□ 0.96
COL5A3P25940 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC21.06■□□□□ 0.96
COL5A3P25940 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC21.06■□□□□ 0.96
COL5A3P25940 SNX29P1-201ENST00000548357 1007 ntBASIC21.06■□□□□ 0.96
COL5A3P25940 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
COL5A3P25940 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC21.06■□□□□ 0.96
COL5A3P25940 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A3P25940 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
COL5A3P25940 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.05■□□□□ 0.96
COL5A3P25940 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 SPDYE19P-201ENST00000338590 713 ntBASIC21.05■□□□□ 0.96
COL5A3P25940 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC21.05■□□□□ 0.96
COL5A3P25940 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC21.05■□□□□ 0.96
COL5A3P25940 AC114501.2-201ENST00000439631 535 ntBASIC21.05■□□□□ 0.96
COL5A3P25940 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
COL5A3P25940 RAB35-202ENST00000534951 939 ntTSL 2 BASIC21.05■□□□□ 0.96
COL5A3P25940 5S_rRNA.22-201ENST00000614916 106 ntBASIC21.05■□□□□ 0.96
COL5A3P25940 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.05■□□□□ 0.96
COL5A3P25940 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A3P25940 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC21.05■□□□□ 0.96
COL5A3P25940 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.05■□□□□ 0.96
COL5A3P25940 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.04■□□□□ 0.96
COL5A3P25940 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC21.04■□□□□ 0.96
COL5A3P25940 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A3P25940 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
COL5A3P25940 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC21.04■□□□□ 0.96
COL5A3P25940 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
COL5A3P25940 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC21.04■□□□□ 0.96
COL5A3P25940 APOC4-201ENST00000591600 348 ntTSL 3 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms