Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GPAA1P2-201ENST00000417923 928 ntBASIC17.35■□□□□ 0.37
COL9A1P20849 HINT2P1-201ENST00000419438 481 ntBASIC17.35■□□□□ 0.37
COL9A1P20849 TMEM14DP-201ENST00000422205 345 ntBASIC17.35■□□□□ 0.37
COL9A1P20849 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
COL9A1P20849 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 IGHJ2P-201ENST00000454480 60 ntBASIC17.35■□□□□ 0.37
COL9A1P20849 AC087163.2-201ENST00000457299 853 ntBASIC17.35■□□□□ 0.37
COL9A1P20849 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.35■□□□□ 0.37
COL9A1P20849 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
COL9A1P20849 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.35■□□□□ 0.37
COL9A1P20849 AC243960.2-201ENST00000600996 747 ntBASIC17.35■□□□□ 0.37
COL9A1P20849 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.35■□□□□ 0.37
COL9A1P20849 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.35■□□□□ 0.37
COL9A1P20849 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL9A1P20849 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.35■□□□□ 0.37
COL9A1P20849 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.35■□□□□ 0.37
COL9A1P20849 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL9A1P20849 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.34■□□□□ 0.37
COL9A1P20849 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.34■□□□□ 0.37
COL9A1P20849 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
COL9A1P20849 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
COL9A1P20849 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL9A1P20849 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
COL9A1P20849 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.34■□□□□ 0.37
COL9A1P20849 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.34■□□□□ 0.37
COL9A1P20849 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.34■□□□□ 0.37
COL9A1P20849 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.34■□□□□ 0.37
COL9A1P20849 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL9A1P20849 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.34■□□□□ 0.37
COL9A1P20849 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.34■□□□□ 0.37
COL9A1P20849 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL9A1P20849 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.34■□□□□ 0.37
COL9A1P20849 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.34■□□□□ 0.37
COL9A1P20849 SPDYE12P-201ENST00000618416 771 ntBASIC17.34■□□□□ 0.37
COL9A1P20849 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL9A1P20849 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL9A1P20849 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL9A1P20849 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL9A1P20849 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.33■□□□□ 0.37
COL9A1P20849 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.33■□□□□ 0.37
COL9A1P20849 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
COL9A1P20849 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL9A1P20849 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.33■□□□□ 0.37
COL9A1P20849 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.33■□□□□ 0.36
COL9A1P20849 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
COL9A1P20849 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 AC234644.1-201ENST00000406065 370 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.33■□□□□ 0.36
COL9A1P20849 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC17.33■□□□□ 0.36
COL9A1P20849 GNAQP1-201ENST00000444815 1067 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 AC009477.1-201ENST00000452936 217 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 CROCCP4-201ENST00000457096 498 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.33■□□□□ 0.36
COL9A1P20849 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.33■□□□□ 0.36
COL9A1P20849 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
COL9A1P20849 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.33■□□□□ 0.36
COL9A1P20849 CHCHD2P3-201ENST00000603038 451 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.33■□□□□ 0.36
COL9A1P20849 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
COL9A1P20849 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
COL9A1P20849 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms