Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 AC023157.3-201ENST00000619086 2088 ntBASIC13.22□□□□□ -0.29
CXCL1P09341 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC13.22□□□□□ -0.29
CXCL1P09341 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
CXCL1P09341 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
CXCL1P09341 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 ESRRAP1-201ENST00000400596 1257 ntBASIC13.22□□□□□ -0.29
CXCL1P09341 AL355802.2-201ENST00000402069 882 ntBASIC13.22□□□□□ -0.29
CXCL1P09341 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 AC116562.2-201ENST00000507042 360 ntBASIC13.22□□□□□ -0.29
CXCL1P09341 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 ADM-205ENST00000528544 586 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 AC104390.1-201ENST00000555663 520 ntBASIC13.22□□□□□ -0.29
CXCL1P09341 MIR4674-201ENST00000582457 87 ntBASIC13.22□□□□□ -0.29
CXCL1P09341 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 AC005089.1-201ENST00000619486 2241 ntBASIC13.22□□□□□ -0.29
CXCL1P09341 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.22□□□□□ -0.29
CXCL1P09341 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CXCL1P09341 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
CXCL1P09341 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 AL135905.2-201ENST00000584934 1404 ntBASIC13.22□□□□□ -0.29
CXCL1P09341 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CXCL1P09341 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
CXCL1P09341 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 SRI-203ENST00000419179 1307 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
CXCL1P09341 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 AC106881.1-201ENST00000605849 3329 ntBASIC13.21□□□□□ -0.29
CXCL1P09341 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC13.21□□□□□ -0.29
CXCL1P09341 SLC25A1P4-201ENST00000567977 778 ntBASIC13.21□□□□□ -0.29
CXCL1P09341 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 CYGB-204ENST00000589342 815 ntTSL 3 BASIC13.21□□□□□ -0.29
CXCL1P09341 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC13.21□□□□□ -0.29
CXCL1P09341 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.21□□□□□ -0.29
CXCL1P09341 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.21□□□□□ -0.29
CXCL1P09341 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CXCL1P09341 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
CXCL1P09341 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CXCL1P09341 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms