Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
LDB3O75112 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
LDB3O75112 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16■□□□□ 0.15
LDB3O75112 BX640515.1-201ENST00000617215 977 ntBASIC16■□□□□ 0.15
LDB3O75112 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16■□□□□ 0.15
LDB3O75112 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
LDB3O75112 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16■□□□□ 0.15
LDB3O75112 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
LDB3O75112 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16■□□□□ 0.15
LDB3O75112 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16■□□□□ 0.15
LDB3O75112 AC002310.6-201ENST00000624451 1377 ntBASIC16■□□□□ 0.15
LDB3O75112 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
LDB3O75112 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 PRORSD1P-202ENST00000563365 2154 ntBASIC15.99■□□□□ 0.15
LDB3O75112 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.99■□□□□ 0.15
LDB3O75112 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 MRPL20P1-201ENST00000400819 433 ntBASIC15.99■□□□□ 0.15
LDB3O75112 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.99■□□□□ 0.15
LDB3O75112 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.99■□□□□ 0.15
LDB3O75112 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.99■□□□□ 0.15
LDB3O75112 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.99■□□□□ 0.15
LDB3O75112 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.99■□□□□ 0.15
LDB3O75112 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.99■□□□□ 0.15
LDB3O75112 DUX4L17-201ENST00000557360 1267 ntBASIC15.99■□□□□ 0.15
LDB3O75112 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 Z83851.2-201ENST00000609564 659 ntBASIC15.99■□□□□ 0.15
LDB3O75112 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.99■□□□□ 0.15
LDB3O75112 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.99■□□□□ 0.15
LDB3O75112 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
LDB3O75112 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.99■□□□□ 0.15
LDB3O75112 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDB3O75112 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.99■□□□□ 0.15
LDB3O75112 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
LDB3O75112 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LDB3O75112 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 AD000864.1-201ENST00000624076 2295 ntBASIC15.98■□□□□ 0.15
LDB3O75112 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
LDB3O75112 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.98■□□□□ 0.15
LDB3O75112 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.98■□□□□ 0.15
LDB3O75112 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.98■□□□□ 0.15
LDB3O75112 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 PCDHB17P-201ENST00000539533 2393 ntBASIC15.98■□□□□ 0.15
LDB3O75112 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.98■□□□□ 0.15
LDB3O75112 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.98■□□□□ 0.15
LDB3O75112 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.98■□□□□ 0.15
LDB3O75112 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
LDB3O75112 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.98■□□□□ 0.15
LDB3O75112 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
LDB3O75112 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDB3O75112 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
LDB3O75112 AC105020.1-201ENST00000435356 2205 ntBASIC15.98■□□□□ 0.15
LDB3O75112 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.98■□□□□ 0.15
LDB3O75112 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.98■□□□□ 0.15
LDB3O75112 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.97■□□□□ 0.15
LDB3O75112 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.97■□□□□ 0.15
LDB3O75112 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LDB3O75112 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
LDB3O75112 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.97■□□□□ 0.15
LDB3O75112 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDB3O75112 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDB3O75112 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDB3O75112 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.97■□□□□ 0.15
LDB3O75112 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LDB3O75112 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
LDB3O75112 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms