Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
SDC3O75056 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SDC3O75056 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.58■□□□□ 0.25
SDC3O75056 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.58■□□□□ 0.25
SDC3O75056 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.58■□□□□ 0.25
SDC3O75056 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SDC3O75056 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SDC3O75056 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SDC3O75056 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SDC3O75056 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SDC3O75056 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SDC3O75056 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.58■□□□□ 0.24
SDC3O75056 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.58■□□□□ 0.24
SDC3O75056 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.58■□□□□ 0.24
SDC3O75056 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.58■□□□□ 0.24
SDC3O75056 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.58■□□□□ 0.24
SDC3O75056 AC005412.3-201ENST00000580309 715 ntBASIC16.58■□□□□ 0.24
SDC3O75056 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.58■□□□□ 0.24
SDC3O75056 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.58■□□□□ 0.24
SDC3O75056 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SDC3O75056 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SDC3O75056 AC133963.1-201ENST00000504166 1679 ntBASIC16.58■□□□□ 0.24
SDC3O75056 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SDC3O75056 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SDC3O75056 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.57■□□□□ 0.24
SDC3O75056 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
SDC3O75056 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
SDC3O75056 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.57■□□□□ 0.24
SDC3O75056 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 SPCS2P4-201ENST00000436160 681 ntBASIC16.57■□□□□ 0.24
SDC3O75056 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.57■□□□□ 0.24
SDC3O75056 IGHV3-62-201ENST00000520057 340 ntBASIC16.57■□□□□ 0.24
SDC3O75056 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.57■□□□□ 0.24
SDC3O75056 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.57■□□□□ 0.24
SDC3O75056 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.57■□□□□ 0.24
SDC3O75056 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.57■□□□□ 0.24
SDC3O75056 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
SDC3O75056 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.57■□□□□ 0.24
SDC3O75056 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SDC3O75056 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.57■□□□□ 0.24
SDC3O75056 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SDC3O75056 UXT-AS1-201ENST00000590504 1525 ntBASIC16.56■□□□□ 0.24
SDC3O75056 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SDC3O75056 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SDC3O75056 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.56■□□□□ 0.24
SDC3O75056 RBPMS2P1-201ENST00000437762 623 ntBASIC16.56■□□□□ 0.24
SDC3O75056 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 CNN2P2-201ENST00000443536 909 ntBASIC16.56■□□□□ 0.24
SDC3O75056 CNN2P3-201ENST00000450201 906 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms