Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 SPDYE21P-201ENST00000413323 827 ntBASIC16.8■□□□□ 0.28
MKS1Q9NXB0 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 AP005901.3-202ENST00000581653 237 ntBASIC16.8■□□□□ 0.28
MKS1Q9NXB0 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MKS1Q9NXB0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 AC002310.6-201ENST00000624451 1377 ntBASIC16.79■□□□□ 0.28
MKS1Q9NXB0 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 KRT18P57-201ENST00000443599 1254 ntBASIC16.79■□□□□ 0.28
MKS1Q9NXB0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.79■□□□□ 0.28
MKS1Q9NXB0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 AC004817.3-201ENST00000602957 2129 ntBASIC16.79■□□□□ 0.28
MKS1Q9NXB0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MKS1Q9NXB0 SIGLEC16-201ENST00000599858 1437 ntBASIC16.79■□□□□ 0.28
MKS1Q9NXB0 AL596087.1-201ENST00000400979 1969 ntBASIC16.78■□□□□ 0.28
MKS1Q9NXB0 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 AP000867.4-201ENST00000641616 219 ntBASIC16.78■□□□□ 0.28
MKS1Q9NXB0 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MKS1Q9NXB0 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms