Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 HNRNPDP1-201ENST00000439535 754 ntBASIC18.23■□□□□ 0.51
SIX2Q9NPC8 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 MIR4492-201ENST00000581627 80 ntBASIC18.23■□□□□ 0.51
SIX2Q9NPC8 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 AF228730.7-201ENST00000641842 219 ntBASIC18.23■□□□□ 0.51
SIX2Q9NPC8 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 AL662844.4-201ENST00000606367 2838 ntBASIC18.22■□□□□ 0.51
SIX2Q9NPC8 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 AC107918.2-201ENST00000530817 355 ntBASIC18.22■□□□□ 0.51
SIX2Q9NPC8 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.22■□□□□ 0.51
SIX2Q9NPC8 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 LINC01711-201ENST00000598340 967 ntBASIC18.22■□□□□ 0.51
SIX2Q9NPC8 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX2Q9NPC8 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 PI4KAP1-204ENST00000612579 1703 ntBASIC18.21■□□□□ 0.51
SIX2Q9NPC8 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AC018712.1-201ENST00000455767 687 ntBASIC18.21■□□□□ 0.51
SIX2Q9NPC8 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 HLA-J-202ENST00000469281 1241 ntBASIC18.21■□□□□ 0.51
SIX2Q9NPC8 RNPS1P1-201ENST00000507437 918 ntBASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AC006557.2-201ENST00000592985 1240 ntBASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AL691432.3-201ENST00000621860 400 ntBASIC18.21■□□□□ 0.51
SIX2Q9NPC8 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 AL139011.1-202ENST00000642063 584 ntBASIC18.21■□□□□ 0.51
SIX2Q9NPC8 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX2Q9NPC8 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms