Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM56Q9BRZ2 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 MINOS1P3-201ENST00000457048 203 ntBASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 VENTXP7-201ENST00000475503 772 ntBASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM56Q9BRZ2 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 KLF4P1-201ENST00000412782 1185 ntBASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 NPAP1P7-201ENST00000613027 823 ntBASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM56Q9BRZ2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
TRIM56Q9BRZ2 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.39■□□□□ 0.38
TRIM56Q9BRZ2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.39■□□□□ 0.38
TRIM56Q9BRZ2 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 FRMD8P1-201ENST00000440433 1524 ntBASIC17.39■□□□□ 0.37
TRIM56Q9BRZ2 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms