Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 POM121L3P-201ENST00000419331 1163 ntBASIC17.1■□□□□ 0.33
VPS39Q96JC1 NUS1P1-201ENST00000446295 882 ntBASIC17.1■□□□□ 0.33
VPS39Q96JC1 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 AC104819.1-201ENST00000504587 486 ntBASIC17.1■□□□□ 0.33
VPS39Q96JC1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 AP000550.4-202ENST00000639755 178 ntBASIC17.1■□□□□ 0.33
VPS39Q96JC1 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS39Q96JC1 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS39Q96JC1 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 PCDHB17P-201ENST00000539533 2393 ntBASIC17.09■□□□□ 0.33
VPS39Q96JC1 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 SIGLEC30P-201ENST00000455569 941 ntBASIC17.09■□□□□ 0.33
VPS39Q96JC1 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 AC074051.2-201ENST00000565115 352 ntBASIC17.09■□□□□ 0.33
VPS39Q96JC1 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS39Q96JC1 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VPS39Q96JC1 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS39Q96JC1 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.08■□□□□ 0.33
VPS39Q96JC1 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
VPS39Q96JC1 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS39Q96JC1 AC018695.7-201ENST00000624587 2492 ntBASIC17.08■□□□□ 0.33
VPS39Q96JC1 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS39Q96JC1 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS39Q96JC1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS39Q96JC1 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS39Q96JC1 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.08■□□□□ 0.33
VPS39Q96JC1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS39Q96JC1 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS39Q96JC1 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 AL020989.1-201ENST00000422979 469 ntBASIC17.08■□□□□ 0.32
VPS39Q96JC1 ACTG1P4-201ENST00000425123 1122 ntBASIC17.08■□□□□ 0.32
VPS39Q96JC1 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 MIR3180-1-201ENST00000580374 94 ntBASIC17.08■□□□□ 0.32
VPS39Q96JC1 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 MIR3180-3-201ENST00000584616 94 ntBASIC17.08■□□□□ 0.32
VPS39Q96JC1 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS39Q96JC1 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS39Q96JC1 AP000867.4-201ENST00000641616 219 ntBASIC17.08■□□□□ 0.32
VPS39Q96JC1 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS39Q96JC1 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS39Q96JC1 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS39Q96JC1 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS39Q96JC1 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms