Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 AC233702.3-201ENST00000578656 1387 ntBASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 AC016734.2-201ENST00000624325 1377 ntBASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 INTS4P1-201ENST00000438455 1935 ntBASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 AC092053.1-201ENST00000605787 1936 ntBASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 AC005332.1-201ENST00000577698 1310 ntBASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 AC005915.1-201ENST00000624912 2018 ntBASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 FRMD8P1-201ENST00000440433 1524 ntBASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 AL020989.1-201ENST00000422979 469 ntBASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 TSSC2-201ENST00000450217 709 ntBASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 MINOS1P3-201ENST00000457048 203 ntBASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 CDV3-207ENST00000508481 661 ntTSL 3 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 KRT18P1-202ENST00000452408 1331 ntBASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC54Q8NEL0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms