Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC50Q8IVM0 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CCDC50Q8IVM0 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC50Q8IVM0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC50Q8IVM0 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 EGFEM1P-202ENST00000431685 1563 ntBASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 AL135999.2-201ENST00000622438 1686 ntBASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 MINOS1P3-201ENST00000457048 203 ntBASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 FAM86EP-206ENST00000510506 987 ntBASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC50Q8IVM0 AC068418.2-201ENST00000577309 3703 ntBASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 AC003669.1-201ENST00000334569 611 ntBASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 TSSC2-201ENST00000450217 709 ntBASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 AC087388.1-201ENST00000571370 1112 ntBASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC50Q8IVM0 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 TP73-AS1-210ENST00000637775 1455 ntBASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 AC011467.2-201ENST00000598425 242 ntBASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 Z69720.1-201ENST00000601483 472 ntBASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC50Q8IVM0 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms