Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 MIR940-201ENST00000401276 94 ntBASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 PMS2P1-201ENST00000431037 1228 ntBASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 AC023511.2-201ENST00000618803 211 ntBASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 AC124067.4-201ENST00000519691 2379 ntBASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 NCF1C-201ENST00000438382 1427 ntBASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 AC098831.1-202ENST00000438821 336 ntBASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 POLD2P1-201ENST00000511220 997 ntBASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 AC106730.1-201ENST00000566722 1090 ntBASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 AL353135.1-201ENST00000606729 504 ntBASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 AC008735.5-201ENST00000623544 497 ntBASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 AC107918.4-202ENST00000641623 219 ntBASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.66■□□□□ 0.26
PTCHD3Q3KNS1 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 AP002414.3-201ENST00000589352 1468 ntBASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD3Q3KNS1 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PTCHD3Q3KNS1 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms