Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.8■□□□□ 0.44
HDAC4P56524 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.8■□□□□ 0.44
HDAC4P56524 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.8■□□□□ 0.44
HDAC4P56524 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.8■□□□□ 0.44
HDAC4P56524 PAWRP1-201ENST00000451083 565 ntBASIC17.8■□□□□ 0.44
HDAC4P56524 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.8■□□□□ 0.44
HDAC4P56524 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.8■□□□□ 0.44
HDAC4P56524 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.8■□□□□ 0.44
HDAC4P56524 FAM215A-202ENST00000632077 792 ntBASIC17.8■□□□□ 0.44
HDAC4P56524 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.8■□□□□ 0.44
HDAC4P56524 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.8■□□□□ 0.44
HDAC4P56524 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HDAC4P56524 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
HDAC4P56524 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.8■□□□□ 0.44
HDAC4P56524 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDAC4P56524 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HDAC4P56524 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.79■□□□□ 0.44
HDAC4P56524 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.79■□□□□ 0.44
HDAC4P56524 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.79■□□□□ 0.44
HDAC4P56524 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.79■□□□□ 0.44
HDAC4P56524 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 TPM4P1-201ENST00000436100 807 ntBASIC17.79■□□□□ 0.44
HDAC4P56524 RNA5SP419-201ENST00000515908 135 ntBASIC17.79■□□□□ 0.44
HDAC4P56524 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.79■□□□□ 0.44
HDAC4P56524 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.79■□□□□ 0.44
HDAC4P56524 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.79■□□□□ 0.44
HDAC4P56524 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 AL049840.3-201ENST00000602669 611 ntBASIC17.79■□□□□ 0.44
HDAC4P56524 AL805961.1-202ENST00000641562 540 ntBASIC17.79■□□□□ 0.44
HDAC4P56524 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.79■□□□□ 0.44
HDAC4P56524 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HDAC4P56524 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDAC4P56524 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.79■□□□□ 0.44
HDAC4P56524 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
HDAC4P56524 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.78■□□□□ 0.44
HDAC4P56524 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 NKILA-202ENST00000614771 2598 ntBASIC17.78■□□□□ 0.44
HDAC4P56524 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.78■□□□□ 0.44
HDAC4P56524 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.78■□□□□ 0.44
HDAC4P56524 AC009078.2-202ENST00000463353 338 ntBASIC17.78■□□□□ 0.44
HDAC4P56524 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.78■□□□□ 0.44
HDAC4P56524 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.78■□□□□ 0.44
HDAC4P56524 SLC25A6P4-201ENST00000586535 553 ntBASIC17.78■□□□□ 0.44
HDAC4P56524 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.78■□□□□ 0.44
HDAC4P56524 MIR7706-201ENST00000613747 67 ntBASIC17.78■□□□□ 0.44
HDAC4P56524 AL773604.1-201ENST00000617417 272 ntBASIC17.78■□□□□ 0.44
HDAC4P56524 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
HDAC4P56524 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.78■□□□□ 0.44
HDAC4P56524 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.78■□□□□ 0.44
HDAC4P56524 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HDAC4P56524 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDAC4P56524 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
HDAC4P56524 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.77■□□□□ 0.44
HDAC4P56524 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
HDAC4P56524 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 AP002414.3-201ENST00000589352 1468 ntBASIC17.77■□□□□ 0.44
HDAC4P56524 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms