Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH6P55285 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.72■□□□□ 0.43
CDH6P55285 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDH6P55285 TUBB8P12-201ENST00000308911 1335 ntBASIC17.72■□□□□ 0.43
CDH6P55285 TUBB7P-202ENST00000428444 1305 ntBASIC17.72■□□□□ 0.43
CDH6P55285 TUBB8P7-204ENST00000567960 1332 ntBASIC17.72■□□□□ 0.43
CDH6P55285 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH6P55285 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH6P55285 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CDH6P55285 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.71■□□□□ 0.43
CDH6P55285 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH6P55285 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH6P55285 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CDH6P55285 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CDH6P55285 UNC93B7-201ENST00000509439 705 ntBASIC17.71■□□□□ 0.43
CDH6P55285 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CDH6P55285 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.71■□□□□ 0.43
CDH6P55285 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.71■□□□□ 0.43
CDH6P55285 AC021087.4-201ENST00000563761 564 ntBASIC17.71■□□□□ 0.43
CDH6P55285 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CDH6P55285 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.71■□□□□ 0.43
CDH6P55285 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 PCDHA14-201ENST00000506751 2298 ntBASIC17.71■□□□□ 0.43
CDH6P55285 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.71■□□□□ 0.43
CDH6P55285 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH6P55285 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH6P55285 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.71■□□□□ 0.43
CDH6P55285 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDH6P55285 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
CDH6P55285 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.71■□□□□ 0.42
CDH6P55285 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CDH6P55285 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CDH6P55285 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CDH6P55285 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
CDH6P55285 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
CDH6P55285 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH6P55285 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.7■□□□□ 0.42
CDH6P55285 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CDH6P55285 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.7■□□□□ 0.42
CDH6P55285 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.7■□□□□ 0.42
CDH6P55285 AL450487.1-201ENST00000426799 995 ntBASIC17.7■□□□□ 0.42
CDH6P55285 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.7■□□□□ 0.42
CDH6P55285 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH6P55285 DUX4L17-201ENST00000557360 1267 ntBASIC17.7■□□□□ 0.42
CDH6P55285 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH6P55285 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH6P55285 AC025062.2-201ENST00000605477 670 ntBASIC17.7■□□□□ 0.42
CDH6P55285 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.7■□□□□ 0.42
CDH6P55285 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CDH6P55285 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.7■□□□□ 0.42
CDH6P55285 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.7■□□□□ 0.42
CDH6P55285 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH6P55285 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH6P55285 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDH6P55285 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.7■□□□□ 0.42
CDH6P55285 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CDH6P55285 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.69■□□□□ 0.42
CDH6P55285 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CDH6P55285 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDH6P55285 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms