Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CLK1P49759 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CLK1P49759 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CLK1P49759 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.07■□□□□ 0.16
CLK1P49759 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.07■□□□□ 0.16
CLK1P49759 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.07■□□□□ 0.16
CLK1P49759 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.07■□□□□ 0.16
CLK1P49759 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.07■□□□□ 0.16
CLK1P49759 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.07■□□□□ 0.16
CLK1P49759 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.07■□□□□ 0.16
CLK1P49759 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 KRT8P47-201ENST00000604727 1398 ntBASIC16.07■□□□□ 0.16
CLK1P49759 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.07■□□□□ 0.16
CLK1P49759 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.07■□□□□ 0.16
CLK1P49759 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CLK1P49759 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.07■□□□□ 0.16
CLK1P49759 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.07■□□□□ 0.16
CLK1P49759 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
CLK1P49759 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.07■□□□□ 0.16
CLK1P49759 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CLK1P49759 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLK1P49759 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CLK1P49759 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CLK1P49759 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CLK1P49759 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.06■□□□□ 0.16
CLK1P49759 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.06■□□□□ 0.16
CLK1P49759 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.06■□□□□ 0.16
CLK1P49759 KRT18P1-202ENST00000452408 1331 ntBASIC16.06■□□□□ 0.16
CLK1P49759 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.06■□□□□ 0.16
CLK1P49759 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.06■□□□□ 0.16
CLK1P49759 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.06■□□□□ 0.16
CLK1P49759 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.06■□□□□ 0.16
CLK1P49759 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CLK1P49759 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.06■□□□□ 0.16
CLK1P49759 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.06■□□□□ 0.16
CLK1P49759 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CLK1P49759 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLK1P49759 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CLK1P49759 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.05■□□□□ 0.16
CLK1P49759 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CLK1P49759 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.05■□□□□ 0.16
CLK1P49759 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
CLK1P49759 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.05■□□□□ 0.16
CLK1P49759 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CLK1P49759 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
CLK1P49759 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.05■□□□□ 0.16
CLK1P49759 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.05■□□□□ 0.16
CLK1P49759 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 ATP5G2P1-201ENST00000433580 426 ntBASIC16.05■□□□□ 0.16
CLK1P49759 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLK1P49759 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms