Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A5P29400 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A5P29400 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
COL4A5P29400 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A5P29400 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A5P29400 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A5P29400 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
COL4A5P29400 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A5P29400 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A5P29400 AC022210.1-201ENST00000449856 793 ntBASIC20.13■□□□□ 0.81
COL4A5P29400 RN7SL752P-201ENST00000463779 287 ntBASIC20.13■□□□□ 0.81
COL4A5P29400 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.13■□□□□ 0.81
COL4A5P29400 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A5P29400 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A5P29400 SPTSSB-204ENST00000617024 1292 ntBASIC20.13■□□□□ 0.81
COL4A5P29400 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC20.13■□□□□ 0.81
COL4A5P29400 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A5P29400 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 AL391825.1-201ENST00000457671 1364 ntBASIC20.12■□□□□ 0.81
COL4A5P29400 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
COL4A5P29400 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL4A5P29400 AL023806.1-201ENST00000603994 1649 ntBASIC20.12■□□□□ 0.81
COL4A5P29400 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
COL4A5P29400 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.12■□□□□ 0.81
COL4A5P29400 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.12■□□□□ 0.81
COL4A5P29400 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.12■□□□□ 0.81
COL4A5P29400 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.12■□□□□ 0.81
COL4A5P29400 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.12■□□□□ 0.81
COL4A5P29400 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL4A5P29400 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.12■□□□□ 0.81
COL4A5P29400 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL4A5P29400 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A5P29400 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.11■□□□□ 0.81
COL4A5P29400 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 AC116353.5-201ENST00000638148 1699 ntBASIC20.11■□□□□ 0.81
COL4A5P29400 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 AC098850.1-201ENST00000419919 790 ntBASIC20.11■□□□□ 0.81
COL4A5P29400 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.11■□□□□ 0.81
COL4A5P29400 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 AL589987.1-201ENST00000453380 819 ntBASIC20.11■□□□□ 0.81
COL4A5P29400 RNA5SP410-201ENST00000516285 106 ntBASIC20.11■□□□□ 0.81
COL4A5P29400 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.11■□□□□ 0.81
COL4A5P29400 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.11■□□□□ 0.81
COL4A5P29400 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL4A5P29400 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A5P29400 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.11■□□□□ 0.81
COL4A5P29400 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL4A5P29400 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A5P29400 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A5P29400 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.1■□□□□ 0.81
COL4A5P29400 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 AC093004.1-201ENST00000508850 424 ntBASIC20.1■□□□□ 0.81
COL4A5P29400 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
COL4A5P29400 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.1■□□□□ 0.81
COL4A5P29400 SIGLEC29P-201ENST00000599873 1114 ntBASIC20.1■□□□□ 0.81
COL4A5P29400 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.1■□□□□ 0.81
COL4A5P29400 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.1■□□□□ 0.81
COL4A5P29400 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 AC108860.2-201ENST00000562760 2183 ntBASIC20.1■□□□□ 0.81
COL4A5P29400 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
COL4A5P29400 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.1■□□□□ 0.81
COL4A5P29400 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A5P29400 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A5P29400 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.1■□□□□ 0.81
COL4A5P29400 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.1■□□□□ 0.81
COL4A5P29400 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL4A5P29400 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL4A5P29400 DOC2GP-202ENST00000514950 1163 ntBASIC20.1■□□□□ 0.81
COL4A5P29400 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.1■□□□□ 0.81
COL4A5P29400 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms