Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 NSUN5P2-203ENST00000457352 1529 ntBASIC17.16■□□□□ 0.34
PTPN4P29074 HYMAI-201ENST00000635591 3347 ntBASIC17.16■□□□□ 0.34
PTPN4P29074 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PTPN4P29074 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTPN4P29074 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.16■□□□□ 0.34
PTPN4P29074 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PTPN4P29074 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.16■□□□□ 0.34
PTPN4P29074 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.16■□□□□ 0.34
PTPN4P29074 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.16■□□□□ 0.34
PTPN4P29074 KRT16P4-201ENST00000453883 522 ntBASIC17.16■□□□□ 0.34
PTPN4P29074 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.16■□□□□ 0.34
PTPN4P29074 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.16■□□□□ 0.34
PTPN4P29074 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.16■□□□□ 0.34
PTPN4P29074 AC008687.5-201ENST00000593746 558 ntBASIC17.16■□□□□ 0.34
PTPN4P29074 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.16■□□□□ 0.34
PTPN4P29074 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
PTPN4P29074 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.16■□□□□ 0.34
PTPN4P29074 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
PTPN4P29074 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PTPN4P29074 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN4P29074 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PTPN4P29074 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN4P29074 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN4P29074 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
PTPN4P29074 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.15■□□□□ 0.34
PTPN4P29074 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.15■□□□□ 0.34
PTPN4P29074 AC116407.2-201ENST00000613639 860 ntBASIC17.15■□□□□ 0.34
PTPN4P29074 AC004263.2-201ENST00000617183 678 ntBASIC17.15■□□□□ 0.34
PTPN4P29074 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.15■□□□□ 0.34
PTPN4P29074 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.15■□□□□ 0.34
PTPN4P29074 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 AC105917.1-201ENST00000506637 2539 ntBASIC17.15■□□□□ 0.34
PTPN4P29074 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
PTPN4P29074 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PTPN4P29074 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTPN4P29074 RNF216P1-203ENST00000404404 2427 ntBASIC17.15■□□□□ 0.34
PTPN4P29074 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
PTPN4P29074 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.34
PTPN4P29074 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.34
PTPN4P29074 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
PTPN4P29074 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.14■□□□□ 0.33
PTPN4P29074 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.14■□□□□ 0.33
PTPN4P29074 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
PTPN4P29074 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PTPN4P29074 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.14■□□□□ 0.33
PTPN4P29074 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.14■□□□□ 0.33
PTPN4P29074 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.14■□□□□ 0.33
PTPN4P29074 MINOS1P3-201ENST00000457048 203 ntBASIC17.14■□□□□ 0.33
PTPN4P29074 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.14■□□□□ 0.33
PTPN4P29074 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.14■□□□□ 0.33
PTPN4P29074 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.14■□□□□ 0.33
PTPN4P29074 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.14■□□□□ 0.33
PTPN4P29074 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PTPN4P29074 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.14■□□□□ 0.33
PTPN4P29074 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
PTPN4P29074 AP005901.3-202ENST00000581653 237 ntBASIC17.14■□□□□ 0.33
PTPN4P29074 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PTPN4P29074 AL121912.1-201ENST00000603683 238 ntBASIC17.14■□□□□ 0.33
PTPN4P29074 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.14■□□□□ 0.33
PTPN4P29074 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms