Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
TPM1P09493 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.82■□□□□ 0.6
TPM1P09493 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 AC122714.2-201ENST00000502787 707 ntBASIC18.82■□□□□ 0.6
TPM1P09493 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.82■□□□□ 0.6
TPM1P09493 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.82■□□□□ 0.6
TPM1P09493 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.82■□□□□ 0.6
TPM1P09493 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
TPM1P09493 AL390719.2-201ENST00000606993 987 ntBASIC18.82■□□□□ 0.6
TPM1P09493 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.82■□□□□ 0.6
TPM1P09493 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.82■□□□□ 0.6
TPM1P09493 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.82■□□□□ 0.6
TPM1P09493 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TPM1P09493 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM1P09493 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
TPM1P09493 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TPM1P09493 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
TPM1P09493 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM1P09493 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM1P09493 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.81■□□□□ 0.6
TPM1P09493 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
TPM1P09493 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.81■□□□□ 0.6
TPM1P09493 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM1P09493 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM1P09493 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.81■□□□□ 0.6
TPM1P09493 AC011558.1-201ENST00000623459 338 ntBASIC18.81■□□□□ 0.6
TPM1P09493 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TPM1P09493 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM1P09493 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.81■□□□□ 0.6
TPM1P09493 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.81■□□□□ 0.6
TPM1P09493 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM1P09493 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.8■□□□□ 0.6
TPM1P09493 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
TPM1P09493 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
TPM1P09493 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
TPM1P09493 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.8■□□□□ 0.6
TPM1P09493 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.8■□□□□ 0.6
TPM1P09493 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.8■□□□□ 0.6
TPM1P09493 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.8■□□□□ 0.6
TPM1P09493 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.8■□□□□ 0.6
TPM1P09493 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.8■□□□□ 0.6
TPM1P09493 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TPM1P09493 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
TPM1P09493 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.8■□□□□ 0.6
TPM1P09493 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.79■□□□□ 0.6
TPM1P09493 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 AC092171.3-201ENST00000610122 2651 ntBASIC18.79■□□□□ 0.6
TPM1P09493 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.79■□□□□ 0.6
TPM1P09493 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.79■□□□□ 0.6
TPM1P09493 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
TPM1P09493 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.79■□□□□ 0.6
TPM1P09493 Z83836.1-201ENST00000624605 1642 ntBASIC18.79■□□□□ 0.6
TPM1P09493 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.79■□□□□ 0.6
TPM1P09493 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms