Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.51■□□□□ 0.23
HOXC4P09017 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 TSEN15P1-201ENST00000423257 515 ntBASIC16.51■□□□□ 0.23
HOXC4P09017 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.51■□□□□ 0.23
HOXC4P09017 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.51■□□□□ 0.23
HOXC4P09017 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.51■□□□□ 0.23
HOXC4P09017 AL139011.1-202ENST00000642063 584 ntBASIC16.51■□□□□ 0.23
HOXC4P09017 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.51■□□□□ 0.23
HOXC4P09017 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HOXC4P09017 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HOXC4P09017 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.5■□□□□ 0.23
HOXC4P09017 AL645939.2-201ENST00000427340 991 ntBASIC16.5■□□□□ 0.23
HOXC4P09017 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.5■□□□□ 0.23
HOXC4P09017 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.5■□□□□ 0.23
HOXC4P09017 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.5■□□□□ 0.23
HOXC4P09017 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 AC093520.2-201ENST00000561830 333 ntBASIC16.5■□□□□ 0.23
HOXC4P09017 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 AC009093.7-201ENST00000623853 1223 ntBASIC16.5■□□□□ 0.23
HOXC4P09017 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HOXC4P09017 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.5■□□□□ 0.23
HOXC4P09017 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.5■□□□□ 0.23
HOXC4P09017 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HOXC4P09017 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.49■□□□□ 0.23
HOXC4P09017 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HOXC4P09017 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HOXC4P09017 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 AL139400.1-201ENST00000366220 510 ntBASIC16.49■□□□□ 0.23
HOXC4P09017 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.49■□□□□ 0.23
HOXC4P09017 SPCS2P4-201ENST00000436160 681 ntBASIC16.49■□□□□ 0.23
HOXC4P09017 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HOXC4P09017 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HOXC4P09017 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.49■□□□□ 0.23
HOXC4P09017 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.49■□□□□ 0.23
HOXC4P09017 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.49■□□□□ 0.23
HOXC4P09017 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.49■□□□□ 0.23
HOXC4P09017 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.49■□□□□ 0.23
HOXC4P09017 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HOXC4P09017 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.49■□□□□ 0.23
HOXC4P09017 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HOXC4P09017 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HOXC4P09017 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.49■□□□□ 0.23
HOXC4P09017 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HOXC4P09017 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms