Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.54□□□□□ -0.08
SDCBPO00560 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.54□□□□□ -0.08
SDCBPO00560 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.54□□□□□ -0.08
SDCBPO00560 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SDCBPO00560 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.54□□□□□ -0.08
SDCBPO00560 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC14.54□□□□□ -0.08
SDCBPO00560 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.54□□□□□ -0.08
SDCBPO00560 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
SDCBPO00560 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC14.54□□□□□ -0.08
SDCBPO00560 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC14.54□□□□□ -0.08
SDCBPO00560 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC14.54□□□□□ -0.08
SDCBPO00560 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.54□□□□□ -0.08
SDCBPO00560 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.54□□□□□ -0.08
SDCBPO00560 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.54□□□□□ -0.08
SDCBPO00560 AL391005.1-201ENST00000623953 2435 ntBASIC14.54□□□□□ -0.08
SDCBPO00560 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDCBPO00560 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SDCBPO00560 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.54□□□□□ -0.08
SDCBPO00560 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SDCBPO00560 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SDCBPO00560 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.54□□□□□ -0.08
SDCBPO00560 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.54□□□□□ -0.08
SDCBPO00560 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
SDCBPO00560 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
SDCBPO00560 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.53□□□□□ -0.08
SDCBPO00560 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SDCBPO00560 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SDCBPO00560 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC14.53□□□□□ -0.08
SDCBPO00560 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SDCBPO00560 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SDCBPO00560 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SDCBPO00560 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 AC005332.1-201ENST00000577698 1310 ntBASIC14.53□□□□□ -0.08
SDCBPO00560 AC097374.2-201ENST00000618617 1306 ntBASIC14.53□□□□□ -0.08
SDCBPO00560 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.53□□□□□ -0.08
SDCBPO00560 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 VENTXP7-201ENST00000475503 772 ntBASIC14.53□□□□□ -0.08
SDCBPO00560 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.53□□□□□ -0.08
SDCBPO00560 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.53□□□□□ -0.08
SDCBPO00560 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC14.53□□□□□ -0.08
SDCBPO00560 AL121672.3-201ENST00000608644 468 ntBASIC14.53□□□□□ -0.08
SDCBPO00560 AL590326.2-201ENST00000625139 305 ntBASIC14.53□□□□□ -0.08
SDCBPO00560 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SDCBPO00560 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDCBPO00560 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.53□□□□□ -0.08
SDCBPO00560 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDCBPO00560 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms