Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 AC064862.7-201ENST00000604520 867 ntBASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 AC005052.1-201ENST00000625181 2492 ntBASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TCRBV7S3A2A0A539 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
TCRBV7S3A2A0A539 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 AC243591.1-201ENST00000452967 1364 ntBASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 PCDHA1-201ENST00000378133 2726 ntBASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 AL445228.2-201ENST00000605589 952 ntBASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 AL353135.1-201ENST00000606729 504 ntBASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 AC093458.2-201ENST00000623150 629 ntBASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.3■□□□□ 0.36
TCRBV7S3A2A0A539 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms