Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 FAM220CP-201ENST00000395253 831 ntBASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 DRAXINP1-201ENST00000437611 948 ntBASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 Z69720.1-201ENST00000601483 472 ntBASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 AL139327.4-201ENST00000612362 153 ntBASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 ARMC10P1-201ENST00000313754 855 ntBASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 MYCLP1-201ENST00000372451 1075 ntBASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 AC103564.2-201ENST00000432853 1299 ntBASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 AC116353.5-201ENST00000638148 1699 ntBASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC19.78■□□□□ 0.76
CCDC39Q9UFE4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 AC016396.2-201ENST00000562575 1417 ntBASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 AC091607.1-201ENST00000490318 1060 ntBASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 AP002414.4-201ENST00000589764 1148 ntBASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 AC091076.1-201ENST00000610741 619 ntBASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 AL358472.4-201ENST00000633140 710 ntBASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 AC233702.3-201ENST00000578656 1387 ntBASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC39Q9UFE4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC39Q9UFE4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.77■□□□□ 0.75
CCDC39Q9UFE4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms