Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SIX2Q9NPC8 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 LAGE3P1-201ENST00000425356 484 ntBASIC18.25■□□□□ 0.51
SIX2Q9NPC8 DUSP5P1-201ENST00000441325 1139 ntBASIC18.25■□□□□ 0.51
SIX2Q9NPC8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 TOP3BP1-201ENST00000420768 1380 ntBASIC18.25■□□□□ 0.51
SIX2Q9NPC8 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 ALOX12P2-203ENST00000570921 1945 ntBASIC18.25■□□□□ 0.51
SIX2Q9NPC8 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.25■□□□□ 0.51
SIX2Q9NPC8 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.24■□□□□ 0.51
SIX2Q9NPC8 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 RPS2P1-201ENST00000434010 821 ntBASIC18.24■□□□□ 0.51
SIX2Q9NPC8 EMBP1-201ENST00000458200 901 ntBASIC18.24■□□□□ 0.51
SIX2Q9NPC8 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 AC006538.1-201ENST00000567905 1585 ntBASIC18.24■□□□□ 0.51
SIX2Q9NPC8 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 AC006449.5-201ENST00000610658 2098 ntBASIC18.24■□□□□ 0.51
SIX2Q9NPC8 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.24■□□□□ 0.51
SIX2Q9NPC8 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX2Q9NPC8 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms