Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM54Q9BYV2 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 GPR89P-201ENST00000407924 1495 ntBASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 AC097637.2-201ENST00000624096 1997 ntBASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 SLC25A1P3-201ENST00000395415 828 ntBASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 KRT18P31-201ENST00000506277 1292 ntBASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 AC124947.2-201ENST00000547118 1133 ntBASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 AC073592.4-201ENST00000623827 446 ntBASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TRIM54Q9BYV2 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 PRYP5-201ENST00000451909 266 ntBASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 AC106795.1-205ENST00000512851 1056 ntBASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 AP001269.4-201ENST00000609611 512 ntBASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 AL732292.2-201ENST00000609649 430 ntBASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 AC148477.5-201ENST00000625164 1645 ntBASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM54Q9BYV2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM54Q9BYV2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms