Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 AC087163.2-201ENST00000457299 853 ntBASIC13.19□□□□□ -0.3
CCDC140Q96MF4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 AC105339.3-201ENST00000560043 636 ntBASIC13.19□□□□□ -0.3
CCDC140Q96MF4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 MIR7706-201ENST00000613747 67 ntBASIC13.19□□□□□ -0.3
CCDC140Q96MF4 FAM215A-202ENST00000632077 792 ntBASIC13.19□□□□□ -0.3
CCDC140Q96MF4 AF228730.7-201ENST00000641842 219 ntBASIC13.19□□□□□ -0.3
CCDC140Q96MF4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 AL021920.2-201ENST00000624828 1351 ntBASIC13.19□□□□□ -0.3
CCDC140Q96MF4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC140Q96MF4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 MRPL3P1-201ENST00000400109 1033 ntBASIC13.18□□□□□ -0.3
CCDC140Q96MF4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 TPM4P1-201ENST00000436100 807 ntBASIC13.18□□□□□ -0.3
CCDC140Q96MF4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 AL356488.2-201ENST00000602755 427 ntBASIC13.18□□□□□ -0.3
CCDC140Q96MF4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 MIR1199-201ENST00000621445 119 ntBASIC13.18□□□□□ -0.3
CCDC140Q96MF4 AC079416.2-201ENST00000625035 1193 ntBASIC13.18□□□□□ -0.3
CCDC140Q96MF4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC140Q96MF4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms