Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 AC068880.1-201ENST00000507289 2297 ntBASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 MIR1233-2-201ENST00000408138 82 ntBASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 MIR1233-1-201ENST00000408722 82 ntBASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 AL139424.1-201ENST00000607572 797 ntBASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP3Q96DZ5 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLIP3Q96DZ5 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 CRYGEP-201ENST00000412192 528 ntBASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.49■□□□□ 0.23
CLIP3Q96DZ5 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms