Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 AC106886.4-201ENST00000623557 2502 ntBASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 AC011676.5-201ENST00000624864 2660 ntBASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 AC005915.1-201ENST00000624912 2018 ntBASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 MIR574-201ENST00000385209 96 ntBASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 RPL13AP23-201ENST00000480739 586 ntBASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 AC092910.1-201ENST00000482027 1129 ntBASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 FRMD8P1-201ENST00000440433 1524 ntBASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.69■□□□□ 0.26
PTCHD3Q3KNS1 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 AL139384.1-201ENST00000612143 3047 ntBASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 AC105020.1-201ENST00000435356 2205 ntBASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 AC008894.3-201ENST00000624324 3103 ntBASIC16.68■□□□□ 0.26
PTCHD3Q3KNS1 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.67■□□□□ 0.26
PTCHD3Q3KNS1 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms