Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLCN3P51790 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.66■□□□□ 0.58
CLCN3P51790 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.66■□□□□ 0.58
CLCN3P51790 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLCN3P51790 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.66■□□□□ 0.58
CLCN3P51790 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.66■□□□□ 0.58
CLCN3P51790 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.66■□□□□ 0.58
CLCN3P51790 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 AC092053.1-201ENST00000605787 1936 ntBASIC18.66■□□□□ 0.58
CLCN3P51790 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CLCN3P51790 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 LINC02012-201ENST00000608206 1725 ntBASIC18.66■□□□□ 0.58
CLCN3P51790 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.66■□□□□ 0.58
CLCN3P51790 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.65■□□□□ 0.58
CLCN3P51790 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLCN3P51790 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CLCN3P51790 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.65■□□□□ 0.58
CLCN3P51790 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.65■□□□□ 0.58
CLCN3P51790 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLCN3P51790 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 AL671277.1-201ENST00000429656 993 ntBASIC18.65■□□□□ 0.58
CLCN3P51790 KRT8P48-201ENST00000515599 1220 ntBASIC18.65■□□□□ 0.58
CLCN3P51790 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.65■□□□□ 0.58
CLCN3P51790 AC004835.2-201ENST00000603762 682 ntBASIC18.65■□□□□ 0.58
CLCN3P51790 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.65■□□□□ 0.58
CLCN3P51790 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 AC141586.5-201ENST00000624546 2050 ntBASIC18.65■□□□□ 0.58
CLCN3P51790 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CLCN3P51790 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CLCN3P51790 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.65■□□□□ 0.58
CLCN3P51790 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLCN3P51790 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.64■□□□□ 0.58
CLCN3P51790 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CLCN3P51790 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.64■□□□□ 0.58
CLCN3P51790 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CLCN3P51790 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CLCN3P51790 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.64■□□□□ 0.58
CLCN3P51790 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.64■□□□□ 0.57
CLCN3P51790 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CLCN3P51790 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLCN3P51790 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CLCN3P51790 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 AL139400.1-201ENST00000366220 510 ntBASIC18.64■□□□□ 0.57
CLCN3P51790 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.64■□□□□ 0.57
CLCN3P51790 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.64■□□□□ 0.57
CLCN3P51790 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.64■□□□□ 0.57
CLCN3P51790 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.64■□□□□ 0.57
CLCN3P51790 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLCN3P51790 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.64■□□□□ 0.57
CLCN3P51790 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CLCN3P51790 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLCN3P51790 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLCN3P51790 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
CLCN3P51790 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.64■□□□□ 0.57
CLCN3P51790 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CLCN3P51790 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CLCN3P51790 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CLCN3P51790 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.63■□□□□ 0.57
CLCN3P51790 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.63■□□□□ 0.57
CLCN3P51790 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.63■□□□□ 0.57
CLCN3P51790 TSEN15P1-201ENST00000423257 515 ntBASIC18.63■□□□□ 0.57
CLCN3P51790 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.63■□□□□ 0.57
CLCN3P51790 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CLCN3P51790 AC091167.2-201ENST00000579581 588 ntBASIC18.63■□□□□ 0.57
CLCN3P51790 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLCN3P51790 AL009183.1-201ENST00000603760 355 ntBASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms