Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 HMGA1P5-201ENST00000412453 271 ntBASIC14.22□□□□□ -0.13
HOXA1P49639 KRT18P65-201ENST00000439811 1286 ntBASIC14.22□□□□□ -0.13
HOXA1P49639 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC14.22□□□□□ -0.13
HOXA1P49639 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.22□□□□□ -0.13
HOXA1P49639 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXA1P49639 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
HOXA1P49639 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXA1P49639 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HOXA1P49639 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXA1P49639 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA1P49639 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA1P49639 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.21□□□□□ -0.13
HOXA1P49639 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXA1P49639 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXA1P49639 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 AC006449.5-201ENST00000610658 2098 ntBASIC14.21□□□□□ -0.13
HOXA1P49639 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
HOXA1P49639 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
HOXA1P49639 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 AC034232.1-201ENST00000506026 1064 ntBASIC14.21□□□□□ -0.13
HOXA1P49639 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXA1P49639 AC113404.2-201ENST00000507884 177 ntBASIC14.21□□□□□ -0.13
HOXA1P49639 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
HOXA1P49639 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA1P49639 SNX21-213ENST00000614929 587 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXA1P49639 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
HOXA1P49639 TMEM191A-211ENST00000637163 1067 ntBASIC14.21□□□□□ -0.13
HOXA1P49639 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA1P49639 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
HOXA1P49639 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.21□□□□□ -0.14
HOXA1P49639 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.21□□□□□ -0.14
HOXA1P49639 REXO1L11P-201ENST00000620964 1927 ntBASIC14.21□□□□□ -0.14
HOXA1P49639 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXA1P49639 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXA1P49639 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXA1P49639 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
HOXA1P49639 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
HOXA1P49639 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
HOXA1P49639 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
HOXA1P49639 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 CYP2T1P-202ENST00000641596 2535 ntBASIC14.2□□□□□ -0.14
HOXA1P49639 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms